View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4059_low_1 (Length: 310)

Name: NF4059_low_1
Description: NF4059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4059_low_1
NF4059_low_1
[»] chr1 (11 HSPs)
chr1 (20-300)||(1856700-1856980)
chr1 (20-300)||(1816064-1816344)
chr1 (54-293)||(1868302-1868541)
chr1 (54-293)||(1842693-1842932)
chr1 (71-206)||(9170766-9170901)
chr1 (71-296)||(9200333-9200558)
chr1 (82-246)||(9218860-9219024)
chr1 (71-254)||(9118329-9118512)
chr1 (71-206)||(9161940-9162075)
chr1 (71-191)||(9156028-9156148)
chr1 (71-197)||(9229734-9229860)
[»] chr7 (3 HSPs)
chr7 (133-300)||(37567642-37567809)
chr7 (20-138)||(37572119-37572237)
chr7 (114-158)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (76-155)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 1856980 - 1856700
Alignment:
Q  20 gagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856980 gagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgt 1856881  T
Q  120 ttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctatt 219  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856880 ttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctatt 1856781  T
Q  220 gttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856780 gttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg 1856700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 1816064 - 1816344
Alignment:
Q  20 gagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgt 119  Q
    |||| ||||||||  |||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1816064 gagttttccaagtaagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgt 1816163  T
Q  120 ttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctatt 219  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  1816164 ttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcgttaatgaattgttcaatttggctttcgtctatt 1816263  T
Q  220 gttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg 300  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  1816264 gttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaactgtaccaaaacctcctctacctatg 1816344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 54 - 293
Target Start/End: Complemental strand, 1868541 - 1868302
Alignment:
Q  54 tgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattc 153  Q
    |||||| |||||  ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||    
T  1868541 tgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattc 1868442  T
Q  154 ctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattat 253  Q
    || |||||||||||||||| |||| ||||||||||||||||||| || ||||||||| | |||||| |||| || |||||||||||||| ||||| ||||    
T  1868441 ctatgatttatttgagagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttat 1868342  T
Q  254 catcaagttcccctttgtaaactgtaccaaaacctccttt 293  Q
    |||| ||    |||||| |||| ||||||||||| |||||    
T  1868341 catctagaagtcctttgaaaacggtaccaaaaccaccttt 1868302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 54 - 293
Target Start/End: Complemental strand, 1842932 - 1842693
Alignment:
Q  54 tgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattc 153  Q
    |||||| |||||  ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||    
T  1842932 tgtgtgtataaaaccagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattc 1842833  T
Q  154 ctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattat 253  Q
    || |||||||||||||||| || |   ||||||||||||||||| |  ||||||||| | |||||| |||| || |||||||||||||| ||||| ||||    
T  1842832 ctatgatttatttgagagagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttat 1842733  T
Q  254 catcaagttcccctttgtaaactgtaccaaaacctccttt 293  Q
    |||| ||    ||||||||||| ||||||||||| |||||    
T  1842732 catctagaaatcctttgtaaacagtaccaaaaccaccttt 1842693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 9170766 - 9170901
Alignment:
Q  71 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 170  Q
    |||| ||||| ||||||||||| || || |||||  ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |     
T  9170766 aaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggt 9170865  T
Q  171 gacaacatccacctcattaatgaattgttcaatttg 206  Q
     | |||| | ||||||||||||||||| ||||||||    
T  9170866 cagaacaactacctcattaatgaattgctcaatttg 9170901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 296
Target Start/End: Original strand, 9200333 - 9200558
Alignment:
Q  71 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 170  Q
    |||| ||||| ||||||||||| || || || ||  ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |     
T  9200333 aaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggt 9200432  T
Q  171 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttg 270  Q
     | |||| | ||||||||||||||||| ||||||||  ||  ||| ||| |||| || ||||| | ||| |||||| | ||||||   |   | ||||||    
T  9200433 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttg 9200532  T
Q  271 taaactgtaccaaaacctcctttacc 296  Q
    ||||||||||||||||||||| ||||    
T  9200533 taaactgtaccaaaacctcctctacc 9200558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 9218860 - 9219024
Alignment:
Q  82 ttgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatcca 181  Q
    ||||||||||| ||||| |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | |    
T  9218860 ttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaacta 9218959  T
Q  182 cctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaatt 246  Q
    |||||||||||||||| || || ||  ||  ||||||| |||| |||||||||| ||| ||||||    
T  9218960 cctcattaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaatt 9219024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 254
Target Start/End: Complemental strand, 9118512 - 9118329
Alignment:
Q  71 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 170  Q
    |||| ||||| | |||||| || ||||| |||||  ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| ||    
T  9118512 aaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttggga 9118413  T
Q  171 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatc 254  Q
     | || | | ||||||||||||||||| || |||||  ||  ||||||| || | |||||||||| ||| || ||||| |||||    
T  9118412 cagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttgacagccacgattctgttatc 9118329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 9161940 - 9162075
Alignment:
Q  71 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 170  Q
    |||| |||||||||||||| || ||||| |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9161940 aaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9162039  T
Q  171 gacaacatccacctcattaatgaattgttcaatttg 206  Q
     | |||| | ||||| |||||||| || ||||||||    
T  9162040 cagaacaactacctcgttaatgaactgctcaatttg 9162075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 9156028 - 9156148
Alignment:
Q  71 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 170  Q
    |||| |||||||||||||| || |||||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| ||    
T  9156028 aaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttggga 9156127  T
Q  171 gacaacatccacctcattaat 191  Q
     |  ||| | |||||||||||    
T  9156128 taggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 9229734 - 9229860
Alignment:
Q  71 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 170  Q
    |||| ||||||||||||| ||| |||||||| |  |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9229734 aaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9229833  T
Q  171 gacaacatccacctcattaatgaattg 197  Q
     | |||| |||||||||| ||||||||    
T  9229834 caaaacaaccacctcatttatgaattg 9229860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 133 - 300
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  133 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttt 232  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||  ||||||||||| || ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  233 tgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg 300  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 37572237 - 37572119
Alignment:
Q  20 gagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgt 119  Q
    |||| ||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  37572237 gagttttctaagttggatcattcatcttaccttgtgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgaggaacttctgt 37572138  T
Q  120 ttctagacaacaccctaag 138  Q
    |||||||||||||||||||    
T  37572137 ttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  114 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 158  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 40597866 - 40597787
Alignment:
Q  76 gtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcct 155  Q
    |||||||||  || ||| |||||||| | ||| |||||||||||||||| |||||| ||||  ||||| |||||||||||    
T  40597866 gtaccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcct 40597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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