View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4060_high_1 (Length: 802)

Name: NF4060_high_1
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4060_high_1
NF4060_high_1
[»] chr4 (1 HSPs)
chr4 (30-783)||(27371470-27372227)


Alignment Details
Target: chr4 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 30 - 783
Target Start/End: Complemental strand, 27372227 - 27371470
Alignment:
Q  30 ggagaaagaagaaaataactaagnnnnnnngaccggctctcattgatctctacaatgagcaactgattccatttcaatttttaggggaaataggatcatt 129  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27372227 ggagaaagaagaaaataactaagaaaaaaagaccggctctcattgatctctacaatgagcaactgattccatttcaatttttaggggaaataggatcatt 27372128  T
Q  130 ttctaactgatgatcactttccatcatgatgcttttcataggttgtattttgattcagatacctttcttcaaaggaacaattagtacttcatgaatagaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27372127 ttctaactgatgatcactttccatcatgatgcttttcataggttgtattttgattcagatacctttcttcaaaggaacaattaatacttcatgaatagaa 27372028  T
Q  230 acattgtgatagtcgtaaaaagaaatttaggtaaagaagaattagtccttaatcaatggcaaattatttatttgtgtgacaactaacaaaggctcaatgt 329  Q
    ||||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27372027 acattgtgagagacgtgaaaagaaatttaagtaaagaagaattagtccttaatcaatggcaaattatttatttgtgtgacaaccaacaaaggctcaatgt 27371928  T
Q  330 cccactcagttttctcactaccaaaatgtagagaaagctaattagtatcacccataacacaagttttggactggaaaaagatcaatgtannnnnnnctaa 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  27371927 cccactcagttttctcactaccaaaatgtagagaaagctaattagtatcacccataacacaagttttggactggaaaaagatcaatgtatttttttctaa 27371828  T
Q  430 ttgaataacatctgcaatacatggaagta---atatactctcaaaa-gatggggactagggaataatatgtccaccccggctaagataaagaaagcaaca 525  Q
    ||||||| |||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371827 ttgaataccatctgcaatacatggaagtatatatatactctcaaaaggatggggactagggaataatatgtccaccccggctaagataaagaaagcaaca 27371728  T
Q  526 ttagcttgtctatttacaaacgtaacctcaaagttaggaataagtagcaaaatgttcctagttcctagttccaatcctgtcacatctttcacatatgcat 625  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371727 ttagctcgtctatttacaaacgtaacctcaaagttaggaataagtagcaaaatgttcctagttcctagttccaatcctgtcacatctttcacatatgcat 27371628  T
Q  626 tgatagtgtgaaccacccattgggcatccaattcgtagatgttaagtgtggtcatgtatcatctcttaaacacattcattaatcaagtagcatgaaacga 725  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371627 tgatagtgtgaaccacccattgggcatccaattcgtagatgttaagtgtggccatgtatcatctcttaaacacattcattaatcaagtagcatgaaacga 27371528  T
Q  726 agttgacaggaagggaaggaaacatcaacatttattttaaatctccccgtgaaggctt 783  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371527 agttgacaggaagggaaggaaacatcaacatttattttaaatctccccgtgaaggctt 27371470  T

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