View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_high_10 (Length: 326)
Name: NF4060_high_10
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 38575808 - 38576108
Alignment:
| Q |
11 |
cacagacatatcaagcaattcgaactgaatattctccattattctctttattctaaacaagtctatcctctttgacacaaaagtacgaagacatttttct |
110 |
Q |
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| T |
38575808 |
cacagacatatcaagcaattcgaactgaatattctccattattctctttattctaaacaagtctatcctctttgacataaaagtacaaagacatttttct |
38575907 |
T |
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| Q |
111 |
gatatgagaaaccagctgttgatcaaaaactgaatctagaaagggagacattcgacannnnnnnagtacaattccaacataaatttcaagnnnnnnnntt |
210 |
Q |
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| T |
38575908 |
gatatgagaaaccagctgttgatcaaaaactgaatctagaaagggagacattccacatttttttagtacaattccaacataaatttcaagaaaaaaaatt |
38576007 |
T |
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| Q |
211 |
ctatcttcggttctttaacttgtttttaaagctcttgttagtaagactcatcttgaccttcagatagtccttgattccaaactttccacatagttgttgt |
310 |
Q |
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| T |
38576008 |
ctatcttcggttctttaacttgtttttaaagctcttgttagcaagactcatcttgacctttagatagtccttgtttccaaactttcaacatagttgttgt |
38576107 |
T |
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| Q |
311 |
t |
311 |
Q |
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| T |
38576108 |
t |
38576108 |
T |
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Back To:
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 5581021 - 5580971
Alignment:
| Q |
37 |
gaatattctccattattctctttattctaaacaagtctatcctctttgaca |
87 |
Q |
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||||||||||| || |||||||||||| | |||||||||||||| |||||| |
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| T |
5581021 |
gaatattctccgttgttctctttattccacacaagtctatcctccttgaca |
5580971 |
T |
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