View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4060_high_22 (Length: 247)

Name: NF4060_high_22
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4060_high_22
NF4060_high_22
[»] chr7 (2 HSPs)
chr7 (1-234)||(7109681-7109919)
chr7 (56-162)||(7110772-7110878)
[»] chr1 (4 HSPs)
chr1 (44-154)||(9987640-9987749)
chr1 (84-162)||(9986483-9986561)
chr1 (74-156)||(9992710-9992790)
chr1 (62-145)||(9991728-9991811)
[»] chr2 (2 HSPs)
chr2 (179-227)||(26169914-26169962)
chr2 (67-154)||(29873561-29873648)
[»] chr4 (1 HSPs)
chr4 (67-154)||(15841390-15841477)
[»] chr8 (1 HSPs)
chr8 (67-115)||(16524451-16524499)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 7109681 - 7109919
Alignment:
Q  1 aagatggataagttgattagcctccttccaatcaacaaaatcaa-----ggatcatccatatttggttcaaagcaaccacacatgtaagagagacatcac 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7109681 aagatggataagttgattagcctccttccaatcaacaaaatcaaccataggatcatccatatttggttcaaagcaaccacacatgtaagagagacatcac 7109780  T
Q  96 aatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctccannnnnnnaaatttaaagcctaactttaaatttg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||       |||| |||||||||||||||||||||    
T  7109781 aatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcgtttataaactgttcaatctccatttttttaaatctaaagcctaactttaaatttg 7109880  T
Q  196 ttcctttttgaggggtttttggcctaatcccctccctcc 234  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7109881 ttcctttttgaggggtttttggcctaatcccctccctcc 7109919  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 7110878 - 7110772
Alignment:
Q  56 atttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcg 155  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||| |||| |    
T  7110878 atttggttcgaagcaaccacacatgtaagagaaacatcacaatttaactcaaaatcttaatgtaatctatttataagtcgcctcgtttataaattgtttg 7110779  T
Q  156 atctcca 162  Q
    | |||||    
T  7110778 acctcca 7110772  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 9987640 - 9987749
Alignment:
Q  44 aggatcatccatatttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcattt 143  Q
    |||||| |||| ||||| |||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||  |||    
T  9987640 aggatcgtccacatttgcttcaaagcaatcacacatgtaagagagacatcac-agttaacccaaaaccttaatgtaatgtgtttataactcgtcttgttt 9987738  T
Q  144 ataaactgttc 154  Q
    ||||| |||||    
T  9987739 ataaattgttc 9987749  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 9986483 - 9986561
Alignment:
Q  84 gagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctcca 162  Q
    ||||||||||| |||||| | |||||| ||||||||||||||||||||||||  ||||||||||| |||| || |||||    
T  9986483 gagagacatcataatttatcccaaaactttaatgtaatgtgtttataagtcgcatcatttataaattgtttgacctcca 9986561  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 9992710 - 9992790
Alignment:
Q  74 acacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcga 156  Q
    |||||||||| |||||||||| | || |||| ||| |||||||||||||||||||||||||||||  |||||||| |||||||    
T  9992710 acacatgtaaaagagacatcatagtt-aacttaaa-ccttaatgtaatgtgtttataagtcgtcttgtttataaattgttcga 9992790  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 9991728 - 9991811
Alignment:
Q  62 ttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttat 145  Q
    ||||||||||||||||   |||| || ||||||||||||||| |||||| |||||||||| || ||| || ||||||| |||||    
T  9991728 ttcaaagcaaccacaccactaagggatacatcacaatttaacccaaaactttaatgtaatatgcttagaaatcgtctcgtttat 9991811  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 26169962 - 26169914
Alignment:
Q  179 gcctaactttaaatttgttcctttttgaggggtttttggcctaatcccc 227  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  26169962 gcctaacttcagatttgttcctttttgagggggttttggcctaatcccc 26169914  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 29873561 - 29873648
Alignment:
Q  67 agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc 154  Q
    |||||||||||| || |||||||| ||||| | | |||||||||||||| | |||| |||||| |||| || || ||||||| |||||    
T  29873561 agcaaccacacaagtgagagagacgtcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttc 29873648  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 15841390 - 15841477
Alignment:
Q  67 agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc 154  Q
    |||||||||||| || |||||||||||||| | | || ||||||||||| | ||||||||||| | || ||||| ||| ||| |||||    
T  15841390 agcaaccacacaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttc 15841477  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 16524499 - 16524451
Alignment:
Q  67 agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaa 115  Q
    |||||||||||| |||||||||||| |||| | | ||||||||||||||    
T  16524499 agcaaccacacaagtaagagagacaccacactcttactcaaaaccttaa 16524451  T

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