View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_high_25 (Length: 236)
Name: NF4060_high_25
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 43120755 - 43120555
Alignment:
| Q |
15 |
aagattttcagccacatttgcgaaggcagggaggagggaccaaaagagaccctcatgttagctggttctatagcaaaaggttaacttccaaagaaatgtt |
114 |
Q |
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| T |
43120755 |
aagattttcagccacatttgcgaaggcagggaggagggaccaaaagagaccctcatgttagctgtttctatagcaaaaggttaacttccaaagaaatgtt |
43120656 |
T |
|
| Q |
115 |
ccttacatcgttcaggcaaagcattctgtcctacaccaaaggggacagataaccttccttcttggcaaaaggttagagatttccaactagtaaagtactt |
214 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43120655 |
ccttacatcgttcaggcaaagcattatgtcctacaccaaaggggacagataaccttccttcttggcaaaaggttagagatttccaactagt-aagtactt |
43120557 |
T |
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| Q |
215 |
at |
216 |
Q |
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|| |
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| T |
43120556 |
at |
43120555 |
T |
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