View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_high_28 (Length: 225)
Name: NF4060_high_28
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 51861580 - 51861388
Alignment:
| Q |
13 |
agaagaaatcgatcccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatatta |
112 |
Q |
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| T |
51861580 |
agaagaaatcgactccatgaattgtttatccctgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttaaatattc |
51861481 |
T |
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| Q |
113 |
tttcaattttaggaaaacaccaattcgcgnnnnnnnntatattaggggaaagtaatgagataataaaataaccaaaccataaaattagattcaag |
207 |
Q |
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| T |
51861480 |
tttcaattttaggaaaacaccaattcgcggaaaaaa--atattaggggaaagtaatgagataataaaataaccaaaccataaaattagattcaag |
51861388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 22158435 - 22158612
Alignment:
| Q |
29 |
atgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattatttcaattttaggaaa |
128 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22158435 |
atgaattgtttattcctgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattctttcaattttaggaaa |
22158534 |
T |
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| Q |
129 |
acaccaattcgcgnnnnnnnntatattaggggaaagtaatgagataataaaataaccaaaccataaaattagattcaag |
207 |
Q |
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| T |
22158535 |
acaccaattcgcg-aaaaaaatatattaggggaaagtaatgagatcataaaataaccaaaccataaaattagattcaag |
22158612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 9333485 - 9333609
Alignment:
| Q |
14 |
gaagaaatcgatcccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattat |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9333485 |
gaagaaatcgaccccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattct |
9333584 |
T |
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| Q |
114 |
ttcaattttaggaaaacaccaattc |
138 |
Q |
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| T |
9333585 |
ttcaattttaggaaaacaccaattc |
9333609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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