View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4060_high_9 (Length: 338)

Name: NF4060_high_9
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4060_high_9
NF4060_high_9
[»] chr6 (3 HSPs)
chr6 (149-316)||(26808676-26808843)
chr6 (84-153)||(26809000-26809069)
chr6 (86-137)||(26719466-26719517)
[»] chr1 (3 HSPs)
chr1 (84-137)||(52684301-52684354)
chr1 (89-151)||(52978437-52978499)
chr1 (87-153)||(2703526-2703592)
[»] chr8 (1 HSPs)
chr8 (84-137)||(36089707-36089760)
[»] chr3 (1 HSPs)
chr3 (84-137)||(33718093-33718146)
[»] chr7 (1 HSPs)
chr7 (84-137)||(18931397-18931450)
[»] scaffold0013 (1 HSPs)
scaffold0013 (102-153)||(13605-13656)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 149 - 316
Target Start/End: Complemental strand, 26808843 - 26808676
Alignment:
Q  149 gagaatactccttccttgcacaattaaataactcaaaggacctccatgtttctttccccccgcacaatgggattctcaattgtgcttgttcctcatgata 248  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||   |||||||| ||| |||||||| ||||| ||    
T  26808843 gagaatacttcttccttgcacaattaaataactcaaaggacctccatgtttcttcccccctgcacaagtcgattctcatttgcgcttgttcgtcatgtta 26808744  T
Q  249 cttaaaatttgaactactctctaacaatttaagctcaacatggatcctttcattaattaaaagttctt 316  Q
     || |||||||| ||||||| |||||||||||||||||||||||||| ||||||  |||||| |||||    
T  26808743 gttgaaatttgagctactctttaacaatttaagctcaacatggatccattcattttttaaaaattctt 26808676  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 26809069 - 26809000
Alignment:
Q  84 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaatagagttgcagagagaa 153  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | || ||||||||||||    
T  26809069 atggaaaatgggatagttcatcaaagtacatctgttaactcacctcatcaaagtggaattgcagagagaa 26809000  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 26719517 - 26719466
Alignment:
Q  86 ggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 137  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||||||||    
T  26719517 ggaacatgggatagtttatcaaagtacatgtgttaactctcctcaacaaaat 26719466  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 52684354 - 52684301
Alignment:
Q  84 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 137  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52684354 atggaaaatgggatagttcatcaaagtacatgtgttaactcaccccaacaaaat 52684301  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 52978499 - 52978437
Alignment:
Q  89 aaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaatagagttgcagagag 151  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||| ||||    
T  52978499 aaatgggatagttcatcaaagtacatgtgttaactcaccccaataaaatggaattgcatagag 52978437  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 2703592 - 2703526
Alignment:
Q  87 gaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaatagagttgcagagagaa 153  Q
    |||||||| || || ||||||||| |||||||||||||||| ||||||||| || ||||||||||||    
T  2703592 gaaaatggaattgtacatcaaagttcatgtgttaactcaccccaacaaaatggaattgcagagagaa 2703526  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 36089760 - 36089707
Alignment:
Q  84 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 137  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36089760 atggaaaatgagatagttcatcaaagtacatgtgttaactcaccccaacaaaat 36089707  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 33718093 - 33718146
Alignment:
Q  84 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 137  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  33718093 atggaaaatgggatagttcatcaaagtacatgtgttaacttaccccaacaaaat 33718146  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 18931397 - 18931450
Alignment:
Q  84 atggaaaatgggatagttcatcaaagtacatgtgttaactcacctcaacaaaat 137  Q
    |||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  18931397 atggaaaatgggatagttcagcaaagtacatgtgttagctcaccccaacaaaat 18931450  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 13605 - 13656
Alignment:
Q  102 catcaaagtacatgtgttaactcacctcaacaaaatagagttgcagagagaa 153  Q
    ||||||||| |||||||||||||||| ||| ||||| || ||||||||||||    
T  13605 catcaaagttcatgtgttaactcaccccaaaaaaatggaattgcagagagaa 13656  T

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