View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4060_low_1 (Length: 802)

Name: NF4060_low_1
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4060_low_1
NF4060_low_1
[»] chr4 (1 HSPs)
chr4 (30-783)||(27371470-27372227)


Alignment Details
Target: chr4 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 30 - 783
Target Start/End: Complemental strand, 27372227 - 27371470
Alignment:
Q  30 ggagaaagaagaaaataactaagnnnnnnngaccggctctcattgatctctacaatgagcaactgattccatttcaatttttaggggaaataggatcatt 129  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27372227 ggagaaagaagaaaataactaagaaaaaaagaccggctctcattgatctctacaatgagcaactgattccatttcaatttttaggggaaataggatcatt 27372128  T
Q  130 ttctaactgatgatcactttccatcatgatgcttttcataggttgtattttgattcagatacctttcttcaaaggaacaattagtacttcatgaatagaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27372127 ttctaactgatgatcactttccatcatgatgcttttcataggttgtattttgattcagatacctttcttcaaaggaacaattaatacttcatgaatagaa 27372028  T
Q  230 acattgtgatagtcgtaaaaagaaatttaggtaaagaagaattagtccttaatcaatggcaaattatttatttgtgtgacaactaacaaaggctcaatgt 329  Q
    ||||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27372027 acattgtgagagacgtgaaaagaaatttaagtaaagaagaattagtccttaatcaatggcaaattatttatttgtgtgacaaccaacaaaggctcaatgt 27371928  T
Q  330 cccactcagttttctcactaccaaaatgtagagaaagctaattagtatcacccataacacaagttttggactggaaaaagatcaatgtannnnnnnctaa 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  27371927 cccactcagttttctcactaccaaaatgtagagaaagctaattagtatcacccataacacaagttttggactggaaaaagatcaatgtatttttttctaa 27371828  T
Q  430 ttgaataacatctgcaatacatggaagta---atatactctcaaaa-gatggggactagggaataatatgtccaccccggctaagataaagaaagcaaca 525  Q
    ||||||| |||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371827 ttgaataccatctgcaatacatggaagtatatatatactctcaaaaggatggggactagggaataatatgtccaccccggctaagataaagaaagcaaca 27371728  T
Q  526 ttagcttgtctatttacaaacgtaacctcaaagttaggaataagtagcaaaatgttcctagttcctagttccaatcctgtcacatctttcacatatgcat 625  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371727 ttagctcgtctatttacaaacgtaacctcaaagttaggaataagtagcaaaatgttcctagttcctagttccaatcctgtcacatctttcacatatgcat 27371628  T
Q  626 tgatagtgtgaaccacccattgggcatccaattcgtagatgttaagtgtggtcatgtatcatctcttaaacacattcattaatcaagtagcatgaaacga 725  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371627 tgatagtgtgaaccacccattgggcatccaattcgtagatgttaagtgtggccatgtatcatctcttaaacacattcattaatcaagtagcatgaaacga 27371528  T
Q  726 agttgacaggaagggaaggaaacatcaacatttattttaaatctccccgtgaaggctt 783  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371527 agttgacaggaagggaaggaaacatcaacatttattttaaatctccccgtgaaggctt 27371470  T

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