View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_13 (Length: 285)
Name: NF4060_low_13
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 612495 - 612232
Alignment:
| Q |
15 |
agaaataactcatgaatttgaaaaattcaatataatatagtaacgtgagtttagctatgtaaagatatatgcaggttcgaacctcaaacaccctgttttt |
114 |
Q |
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| T |
612495 |
agaaataactcatgaatttgaaaaatttaatataatatagtaacgtgagtttagctctgtaaggatatatgcaggttcgaacctcaaacaccctgttttt |
612396 |
T |
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| Q |
115 |
ctatatttaaaatgtgtgatatctggccatt---aggatactcgacacaattataagaaaaaagaccaaagttgcatgcataaagaaactggataaatca |
211 |
Q |
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| T |
612395 |
ctatatttaaaatgtgtgatctctgaccattagaaggatacttgacagaattataagaaacaagaccaaagttgcatacataaagaaaccggataaatca |
612296 |
T |
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| Q |
212 |
atgagctggtatatatcaaacattcatgattcaggcatatagtaaagagaaccattctatagta |
275 |
Q |
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| T |
612295 |
atgagctggtatatatcaaacattcatgattcaggcatatagtaaagagaaccattctatagta |
612232 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 3350804 - 3350759
Alignment:
| Q |
89 |
gttcgaacctcaaacaccctgtttttctatatttaaaatgtgtgat |
134 |
Q |
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| T |
3350804 |
gttcgaaccccaaacaccctatttttctacatttaaaatgtgtgat |
3350759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 31298701 - 31298657
Alignment:
| Q |
89 |
gttcgaacctcaaacaccctgtttttctatatttaaaatgtgtga |
133 |
Q |
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| T |
31298701 |
gttcgaacctcagacatcctatttctctatatttaaaatgtgtga |
31298657 |
T |
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