View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_17 (Length: 270)
Name: NF4060_low_17
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 46737557 - 46737806
Alignment:
| Q |
19 |
aacgtagtctctattaattggccacactgcatgcaatagggatctactattttccaaacctccaaatccgattccatcctatatcagtgtattctcatca |
118 |
Q |
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| T |
46737557 |
aacgtagtctctattaattggccacaatgcatgcaatagggatctcctattttccaaacctccaaatccgattccatcctatatcagt--attctcatca |
46737654 |
T |
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| Q |
119 |
tgaaaattgcacaacaaattatatgaggaggaaaccggatattccaccaggtcgcaagcacttaccattcggagaagttaaagccataattctccaaatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46737655 |
tgaaaattgcacaacaaattatatgaggaggaaaccggatattccaccaggtcgcaagcacttaccattcggagaagttgaagccataattctccaaatt |
46737754 |
T |
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| Q |
219 |
atatctctagcatgcatttttccaaaataataacattccattcacctttgct |
270 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46737755 |
atatctctagtatgcatttttccaaaataataacattccattcaccattgct |
46737806 |
T |
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