View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4060_low_18 (Length: 264)

Name: NF4060_low_18
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4060_low_18
NF4060_low_18
[»] chr8 (4 HSPs)
chr8 (67-135)||(8472618-8472686)
chr8 (67-134)||(32593464-32593531)
chr8 (67-131)||(541761-541825)
chr8 (67-107)||(20075586-20075626)
[»] chr7 (2 HSPs)
chr7 (67-135)||(1012240-1012308)
chr7 (67-135)||(321888-321954)
[»] chr5 (2 HSPs)
chr5 (67-132)||(4446332-4446397)
chr5 (66-119)||(22160471-22160524)
[»] chr6 (2 HSPs)
chr6 (66-119)||(20592056-20592109)
chr6 (66-119)||(19314507-19314560)
[»] chr4 (2 HSPs)
chr4 (67-135)||(37078940-37079008)
chr4 (66-107)||(30666554-30666595)
[»] chr2 (1 HSPs)
chr2 (66-119)||(817075-817128)
[»] chr1 (2 HSPs)
chr1 (66-119)||(47065085-47065138)
chr1 (66-110)||(47065837-47065881)


Alignment Details
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 8472618 - 8472686
Alignment:
Q  67 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatctt 135  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| || ||||||||    
T  8472618 ttgtaacaagcttggtgcatatgtcatgtatgctccagcttgaggaggggtgttaaagttaagaatctt 8472686  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 32593464 - 32593531
Alignment:
Q  67 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatct 134  Q
    ||||||||||||||||||| |||||||| ||| |||||||| ||||| ||||| |||||| |||||||    
T  32593464 ttgtaacaagcttggtgcacatgtcatgcatgttccagcttgaggagaggtgttaaaattaagaatct 32593531  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 541825 - 541761
Alignment:
Q  67 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaa 131  Q
    |||||||||||||||||| |||||||   |||||||||||| ||||||||||| |||||| ||||    
T  541825 ttgtaacaagcttggtgcttatgtcagatatgctccagcttgaggaggggtgttaaaattaagaa 541761  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 20075586 - 20075626
Alignment:
Q  67 ttgtaacaagcttggtgcatatgtcatgaatgctccagctt 107  Q
    ||||||||||||  |||||||||||||| ||||||||||||    
T  20075586 ttgtaacaagctgtgtgcatatgtcatgtatgctccagctt 20075626  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 1012240 - 1012308
Alignment:
Q  67 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatctt 135  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| || ||||||||    
T  1012240 ttgtaacaagcttggtgcatatgtcatgtatgctccagcttgaggaggggtgttaaagttaagaatctt 1012308  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 321888 - 321954
Alignment:
Q  67 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatctt 135  Q
    ||||||||||||||||||  |||||||| ||||| |||||| ||||||| ||| |||||| ||||||||    
T  321888 ttgtaacaagcttggtgc--atgtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctt 321954  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 4446332 - 4446397
Alignment:
Q  67 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaat 132  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| || |||||    
T  4446332 ttgtaacaagcttggtgcatatgtcatgtatgctccagcttgaggaggggtgttaaagttaagaat 4446397  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 22160524 - 22160471
Alignment:
Q  66 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 119  Q
    |||||||||||||||||| ||||| |||| ||||| |||||| |||||| ||||    
T  22160524 tttgtaacaagcttggtgtatatgacatgtatgcttcagcttgaggaggagtgt 22160471  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 20592109 - 20592056
Alignment:
Q  66 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 119  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||| ||||    
T  20592109 tttgtaacaagcttggtgcatatgacatgtatgctccagcttgaggaggagtgt 20592056  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 19314507 - 19314560
Alignment:
Q  66 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 119  Q
    ||||| |||||||||||||||||| || | |||||||||||| |||||| ||||    
T  19314507 tttgttacaagcttggtgcatatgacaagtatgctccagcttgaggaggagtgt 19314560  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 37078940 - 37079008
Alignment:
Q  67 ttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgtgaaaatttagaatctt 135  Q
    ||||||||||||||||  |||||||||| ||||| |||||| ||||||||||| ||| || ||||||||    
T  37078940 ttgtaacaagcttggtttatatgtcatgtatgctacagcttgaggaggggtgttaaagttaagaatctt 37079008  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 30666554 - 30666595
Alignment:
Q  66 tttgtaacaagcttggtgcatatgtcatgaatgctccagctt 107  Q
    |||||||||||||||||||||||  |||| ||||||||||||    
T  30666554 tttgtaacaagcttggtgcatataacatgcatgctccagctt 30666595  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 817128 - 817075
Alignment:
Q  66 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 119  Q
    |||||||||||||||||||||||| |||| ||||| |||||| |||||| ||||    
T  817128 tttgtaacaagcttggtgcatatgacatgtatgcttcagcttgaggaggagtgt 817075  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 47065138 - 47065085
Alignment:
Q  66 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcaggaggggtgt 119  Q
    |||||||||||||||||||||||| |||| || | ||||||| |||| ||||||    
T  47065138 tttgtaacaagcttggtgcatatgacatgtataccccagcttgaggaagggtgt 47065085  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 47065837 - 47065881
Alignment:
Q  66 tttgtaacaagcttggtgcatatgtcatgaatgctccagcttcag 110  Q
    |||||||||| ||||||||||||| |||| |||||| ||||||||    
T  47065837 tttgtaacaaacttggtgcatatgacatgtatgctctagcttcag 47065881  T

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