View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_23 (Length: 249)
Name: NF4060_low_23
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38945827 - 38946062
Alignment:
| Q |
1 |
atgtaacggccctatgagttgaaagaaagaaagaaaatatggaaactagacgttatttcggaaagaactttactacaattttaatttaatattcaattca |
100 |
Q |
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| T |
38945827 |
atgtaacggccctatgagttgaaagaaagaaagaaaatatggaaactagacgttatttcggaaagaactttactacagttttaatttaatattcaattca |
38945926 |
T |
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| Q |
101 |
taaagttggatccaattcatattttaataagaactataatccnnnnnnntcaatatcgttgtgtatagttctgaaccaaggagcctagtgaacgtgtata |
200 |
Q |
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| T |
38945927 |
taaagttggatccaattcatattttaataagaactataatccaaaaaaatcaatatcgttgtgta---ttctgaaccaaggagcctagtgaacgtgtata |
38946023 |
T |
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| Q |
201 |
ctcaagtttcatttcaatttcatacacattcattttcat |
239 |
Q |
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| T |
38946024 |
ctcaagtttcatttcaatttcatacacattcattttcat |
38946062 |
T |
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