View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_26 (Length: 237)
Name: NF4060_low_26
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_26 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 475068 - 475320
Alignment:
| Q |
1 |
agcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagac |
100 |
Q |
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| T |
475068 |
agcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagac |
475167 |
T |
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| Q |
101 |
cttaatgcatggaagattaattctctacttcaatttggttgcgctttatatgcagtatgcccatattttccatgat-------------ttgtata---t |
184 |
Q |
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| T |
475168 |
cttaatgcatggaaaattaattctctacttcaatttggttgcgctttatatgcagtatgcccatattttccatgatgatacaacaatacttgtatatatt |
475267 |
T |
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| Q |
185 |
attaattaatacacattgagtggcttaatttgtaataaataaatacattttgc |
237 |
Q |
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| T |
475268 |
attaattaatacacattgagtggcctaatttgtaataaataaatacattttgc |
475320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 468524 - 468682
Alignment:
| Q |
1 |
agcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagac |
100 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
468524 |
agcttatgcaagtcatcccaattacttatcactttgtgcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagac |
468623 |
T |
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| Q |
101 |
cttaatgcatggaagattaattctctacttcaatttggttgcgctttatatgcagtatg |
159 |
Q |
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| T |
468624 |
tttaatggatggaagattaagtctctgcttcaatttggtagcgctttatatgctgtatg |
468682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 457399 - 457556
Alignment:
| Q |
1 |
agcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagac |
100 |
Q |
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| T |
457399 |
agcttacgcaagccatcctaattatatatcattgtcagcttggatgtgtttaatttcaacattacaatcatcaatactgacgttattcttggagccagac |
457498 |
T |
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| Q |
101 |
cttaatgcatggaagattaattctctacttcaatttggttgcgctttatatgcagtat |
158 |
Q |
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| T |
457499 |
ctgaatgcatggaaaattaattctctacttcaatttgggtgcactttatatgcagtat |
457556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 449130 - 449286
Alignment:
| Q |
3 |
cttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagacct |
102 |
Q |
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| T |
449130 |
cttacgcaagccatcctaattatttatcattgtcagcctggatgtgtataatgtcaacattacaatcatcaatagtggcactattctttgagccaaactt |
449229 |
T |
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| Q |
103 |
taatgcatggaagattaattctctacttcaatttggttgcgctttatatgcagtatg |
159 |
Q |
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||||||||||||||||| |||||| ||||| | |||||| |||||||||||||||| |
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| T |
449230 |
gaatgcatggaagattaaatctctagttcaactcggttgcactttatatgcagtatg |
449286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 480531 - 480689
Alignment:
| Q |
1 |
agcttatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagac |
100 |
Q |
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|||||||||||| ||||| ||||| || ||| || |||||||||||||||| ||| | ||||| |||||| || |||||||| ||||| | || ||||| |
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| T |
480531 |
agcttatgcaagccatcctaattacttgtcatttacagcatggatgtgtttaatgtctacatttcaatcaacagtagtcacattattcgtggaatcagac |
480630 |
T |
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| Q |
101 |
cttaatgcatggaagattaattctctacttcaatttggttgcgctttatatgcagtatg |
159 |
Q |
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|| |||| |||||||| |||||| | ||||||||||||||| ||||||||||||||| |
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| T |
480631 |
ctaaatgtttggaagatcaattctttgcttcaatttggttgcattttatatgcagtatg |
480689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 27490199 - 27490045
Alignment:
| Q |
5 |
tatgcaagtcatcccaattatttatcactttcagcatggatgtgtttcatggcaacattacaatcagcattagtcacactattcttagagccagacctta |
104 |
Q |
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|||||||| ||||| ||| ||||| |||||||| ||||||||||| |||||||||||||||||| || |||| ||||||||| | ||| |||| || | |
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| T |
27490199 |
tatgcaagccatccaaataccttatctctttcagcctggatgtgtttaatggcaacattacaatcatcactagtgacactattcatggaggcagatctaa |
27490100 |
T |
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| Q |
105 |
atgcatggaagattaattctctacttcaatttggttgcgctttatatgcagtatg |
159 |
Q |
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|||| |||||||||| |||||||||||||||||||||| ||||||| ||||||| |
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| T |
27490099 |
atgcgtggaagattacttctctacttcaatttggttgcattttatattcagtatg |
27490045 |
T |
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