View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_28 (Length: 228)
Name: NF4060_low_28
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 39263945 - 39264139
Alignment:
| Q |
15 |
cagatcaaaacaacagcagacatgctgcgcaatagacagaaaacatcaccaacagctgctgttcggtcatgacagcagcaccaaaaacagtactcggacc |
114 |
Q |
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| T |
39263945 |
cagatcaaaacaacagcagacatgc---gcaatagacagaaaacatcaccaacagctgctgttcggtcatgagagcagcaccaaaaacggtactcggacc |
39264041 |
T |
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| Q |
115 |
accccacagccgaagcactctaaaacaccataggacagaagcaacatttccacaaaagacactcataaaacatacaaaagactcccggggcaccaact |
212 |
Q |
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| T |
39264042 |
accccacagccgaagcactctaaaacaccataggacagcagcaacatttccacaaaagacactcataaaacatacaaaagactcccggggcaccaact |
39264139 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 20794749 - 20794712
Alignment:
| Q |
55 |
aaacatcaccaacagctgctgttcggtcatgacagcag |
92 |
Q |
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| T |
20794749 |
aaacagcaccaacagctgctgttctgtcatgacagcag |
20794712 |
T |
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