View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_29 (Length: 227)
Name: NF4060_low_29
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 4645833 - 4646027
Alignment:
| Q |
17 |
gagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgtatccttcttcctccaatttcttt |
116 |
Q |
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| T |
4645833 |
gagcttgaaagtcctttcaccagtattggttccaagaatatcactccattgatctccaatgtttccaacaattctgtatccttcttcctccaatttcttt |
4645932 |
T |
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| Q |
117 |
ctctcagatgatttgtatgtaactgctgttttaccatgatatatggttgtattcctgcaaccnnnnnnntttagtatattttttaatgtacatac |
211 |
Q |
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| T |
4645933 |
ctctcagatgatttgtatgtaactgctgttttaccatgatatatggttgtattcctgcaaccaaaaaaatttagtatattttttaatgtacatac |
4646027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 4650117 - 4650269
Alignment:
| Q |
7 |
gaggagcagagagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgtatccttcttcctc |
106 |
Q |
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| T |
4650117 |
gaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctccatccttcttcttc |
4650216 |
T |
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| Q |
107 |
caatttctttctctcagatgatttgtatgtaactgctgttttaccatgatata |
159 |
Q |
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| T |
4650217 |
aagcttctttctctcagatgatttgtattgaactgcagttttaccatgatata |
4650269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 23682139 - 23681988
Alignment:
| Q |
7 |
gaggagcagagagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgtatccttcttcctc |
106 |
Q |
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| T |
23682139 |
gaggatcagggagtttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactatttccaataattctccatccttcttcttc |
23682040 |
T |
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| Q |
107 |
caatttctttctctcagatgatttgtatgtaactgctgttttaccatgatat |
158 |
Q |
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| T |
23682039 |
aagcttctttctctcagatgatttgtattgaaatgctattttaccatgatat |
23681988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 41872257 - 41872361
Alignment:
| Q |
69 |
tctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatatatggttgtat |
168 |
Q |
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| T |
41872257 |
tctcctatgtttccaatgattttgtatccttcttcctccagcttctttctctctgacgatttgtatgtaactgctgttttaccatgatatattgatgtat |
41872356 |
T |
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| Q |
169 |
tcctg |
173 |
Q |
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|||| |
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| T |
41872357 |
ccctg |
41872361 |
T |
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