View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_31 (Length: 216)
Name: NF4060_low_31
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_31 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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| [»] scaffold1630 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 26948895 - 26948718
Alignment:
| Q |
16 |
atgaaaacttacggggatagtattctcgacaaaagaattgttgaggaaattcgaatttatattcctcgtagatatgatgcaattgttaccacgattgtgc |
115 |
Q |
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| T |
26948895 |
atgaaaacatacagggataatattctcgacaaaagaattgttgagaaaattctaatttctattcctcgtaagtatgatgcaattgttactacgattgagc |
26948796 |
T |
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| Q |
116 |
aaaccaaatatttgtctactttgtcagtgacagaattaataggctcactagaagcttatgagcaaatattgagtaggc |
193 |
Q |
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| T |
26948795 |
aaaccaaagatctgtctactttgttagtgacagaattaataggctcactagaagcttatgagcaaagattgagtaggc |
26948718 |
T |
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Target: scaffold0543 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 2637 - 2755
Alignment:
| Q |
75 |
tattcctcgtagatatgatgcaattgttaccacgattgtgcaaaccaaatatttgtctactttgtcagtgacagaattaataggctcactagaagcttat |
174 |
Q |
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| T |
2637 |
tattcctcataagtatgatgcaattgttgctacaattgagccaaccgaagatttgtctactttgtcagtgacataattaataggctcattagaagcttat |
2736 |
T |
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| Q |
175 |
gagcaaatattgagtaggc |
193 |
Q |
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| T |
2737 |
gagaaaatattgagtaggc |
2755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 4183 - 4301
Alignment:
| Q |
75 |
tattcctcgtagatatgatgcaattgttaccacgattgtgcaaaccaaatatttgtctactttgtcagtgacagaattaataggctcactagaagcttat |
174 |
Q |
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| T |
4183 |
tattcctcataagtatgatgcaattgttgctacaattgagccaaccgaagatttgtctactttgtcagtgacataattaataggctcattagaagcttat |
4282 |
T |
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| Q |
175 |
gagcaaatattgagtaggc |
193 |
Q |
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| T |
4283 |
gagaaaatattgagtaggc |
4301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1630 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold1630
Description:
Target: scaffold1630; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 813 - 970
Alignment:
| Q |
36 |
tattctcgacaaaagaattgttgaggaaattcgaatttatattcctcgtagatatgatgcaattgttaccacgattgtgcaaaccaaatatttgtctact |
135 |
Q |
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||||||||||||||||||||||||| |||||| ||||| ||||||| || ||||||||||| ||| | | ||||| | |||||||| || | |||||| |
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| T |
813 |
tattctcgacaaaagaattgttgagaaaattctaatttctattccttataagtatgatgcaatcgtttctatgattgagaaaaccaaagatctatctact |
912 |
T |
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| Q |
136 |
ttgtcagtgacagaattaataggctcactagaagcttatgagcaaatattgagtaggc |
193 |
Q |
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| T |
913 |
ttgtccttgatagaatcaataggctcagtagaagtttatgagcaaagattgagtaggc |
970 |
T |
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