View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4060_low_33 (Length: 207)

Name: NF4060_low_33
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4060_low_33
NF4060_low_33
[»] chr6 (3 HSPs)
chr6 (1-193)||(34344050-34344260)
chr6 (1-193)||(17951712-17951922)
chr6 (1-193)||(35175534-35175743)
[»] chr4 (9 HSPs)
chr4 (1-192)||(32652343-32652552)
chr4 (1-193)||(43779537-43779747)
chr4 (1-191)||(44993959-44994167)
chr4 (1-193)||(39083883-39084093)
chr4 (3-193)||(42880431-42880639)
chr4 (1-193)||(39921738-39921948)
chr4 (1-193)||(5484784-5484994)
chr4 (1-76)||(39189626-39189701)
chr4 (165-193)||(39189732-39189760)
[»] chr8 (2 HSPs)
chr8 (1-191)||(28433387-28433595)
chr8 (1-193)||(40020305-40020515)
[»] chr5 (1 HSPs)
chr5 (1-190)||(42620436-42620643)
[»] chr2 (3 HSPs)
chr2 (3-190)||(38148742-38148947)
chr2 (1-193)||(11022683-11022893)
chr2 (1-192)||(28246907-28247116)
[»] chr7 (4 HSPs)
chr7 (1-192)||(45463914-45464123)
chr7 (1-193)||(34691239-34691449)
chr7 (1-178)||(48303334-48303529)
chr7 (1-193)||(4322248-4322452)
[»] chr3 (1 HSPs)
chr3 (1-193)||(41944818-41945028)
[»] chr1 (2 HSPs)
chr1 (1-182)||(5783608-5783807)
chr1 (78-118)||(31801996-31802036)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 34344050 - 34344260
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||                   ||||     
T  34344050 tgcaattccttttttacccctatgtttcccattaccatacatcctcacatttcatacagaacgcatcaactaagtccctggttgttcttcttccctccat 34344149  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||| |||||||||||| ||||||||||||||||||    
T  34344150 tttcacttctccaagatcatcatcctctccagcgatcaagcttgcatttttgaaggaagatttcgtctgttttaaaggtaacttcgttcatcttcttctc 34344249  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  34344250 ctttttctctg 34344260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 17951922 - 17951712
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  17951922 tgcaattccttttttacccctgtgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 17951823  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | | |||| ||||||| ||||||||||||||||||    
T  17951822 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 17951723  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  17951722 ctttttctctg 17951712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 35175743 - 35175534
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    |||| ||||||||||| ||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  35175743 tgcatttccttttttatccctatgtttgtcattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 35175644  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| ||| |||| ||||||| ||||||||||||||||||    
T  35175643 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaaga-ttcgtctgttttgaaggtaacttcgttcatcttcttctc 35175545  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  35175544 ctttttctctg 35175534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 32652343 - 32652552
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||                   ||||     
T  32652343 tgcaattccttttttacccctatgtttcccattaccatacatcctcacatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 32652442  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||| |||| ||||||| ||||||||||||||||||    
T  32652443 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaaggaagattttgtctgttttgaaggtaacttcgttcatcttcttctc 32652542  T
Q  183 ctttttctct 192  Q
    ||||||||||    
T  32652543 ctttttctct 32652552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 43779747 - 43779537
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  43779747 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 43779648  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||| |||| ||||||| ||||||||||||||||||    
T  43779647 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 43779548  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  43779547 ctttttctctg 43779537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44994167 - 44993959
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  44994167 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 44994068  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||| |||| ||||||| ||||||||||||||||||    
T  44994067 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 44993968  T
Q  183 ctttttctc 191  Q
    |||||||||    
T  44993967 ctttttctc 44993959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 39083883 - 39084093
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  39083883 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgtttttcttccctccat 39083982  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | | |||| ||||||| ||||||||||||||||||    
T  39083983 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 39084082  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  39084083 ctttttctctg 39084093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 42880639 - 42880431
Alignment:
Q  3 caattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccactt 84  Q
    |||||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   |||| ||    
T  42880639 caattcattttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctttctgttcttcttccctccattt 42880540  T
Q  85 tcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctcct 184  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||| |||| ||||||| ||||||||||||||||||||    
T  42880539 tcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctcct 42880440  T
Q  185 ttttctctg 193  Q
    |||||||||    
T  42880439 ttttctctg 42880431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 39921738 - 39921948
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  39921738 tgcaattccttttttacccctgtgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgttcttcttccctccat 39921837  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | | |||| ||||||| ||||||||||||||||||    
T  39921838 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 39921937  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  39921938 ctttttctctg 39921948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 5484784 - 5484994
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  5484784 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccatgtctgttcttcttccctccat 5484883  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| || ||||| | | |||| ||||||| ||||||||||||||||||    
T  5484884 tttcacttctccaagatcatcttcctcttcggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 5484983  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  5484984 ctttttctctg 5484994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39189626 - 39189701
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtc 76  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  39189626 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtc 39189701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 39189732 - 39189760
Alignment:
Q  165 ttcgttcatcttcttctcctttttctctg 193  Q
    |||||||||||||||||||||||||||||    
T  39189732 ttcgttcatcttcttctcctttttctctg 39189760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28433595 - 28433387
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  28433595 tgcaattccttttttacccctatgtttcccattaccatacatcctcatatttcatacagaacacatcaactaagtccctatctattcttcttccctccat 28433496  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| ||| |||| ||||||| ||| ||||||||||||||    
T  28433495 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaaagaagatttcgtctgttttgaaggtaacttcattcatcttcttctc 28433396  T
Q  183 ctttttctc 191  Q
    |||||||||    
T  28433395 ctttttctc 28433387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 40020515 - 40020305
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  40020515 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtctctgtctgttcttcttccctccat 40020416  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | | |||| ||||||| || |||||||||||||||    
T  40020415 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtttgttttgaaggtaactttgttcatcttcttctc 40020316  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  40020315 ctttttctctg 40020305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 42620643 - 42620436
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  42620643 tgcaattccttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctatttgttcttcttccctccat 42620544  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||| |||| ||||||| ||||||||||||||||||    
T  42620543 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 42620444  T
Q  183 ctttttct 190  Q
    ||||||||    
T  42620443 ctttttct 42620436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 38148742 - 38148947
Alignment:
Q  3 caattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagt------------------catccactt 84  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||                  | |||| ||    
T  38148742 caattacttttttacccctatgtttctcattaccatacatcctcacatttcatacagaacacatcaactaagttccagtctgttcttcttccctccattt 38148841  T
Q  85 tcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctcct 184  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||  ||||||||||| ||||||||||||||||||||    
T  38148842 tcacttctccaagatcatcatcctctcccgcgatcaagcttgcatttttgaaggaagatttcgtctggtttaaaggtaacttcgttcatcttcttctcct 38148941  T
Q  185 ttttct 190  Q
    ||||||    
T  38148942 ttttct 38148947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 11022893 - 11022683
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||||||||||||||                   ||||     
T  11022893 tgcaattacttttttacccctatgtttgccattaccatacatcctcatatttcatacataacacatcaactaagtccctgtttgttcttcttccctccat 11022794  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||| |||| ||||||| ||||||||||||||||||    
T  11022793 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 11022694  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  11022693 ctttttctctg 11022683  T

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Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 28246907 - 28247116
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagt------------------catccac 82  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||                  | ||||     
T  28246907 tgcaattccttttttacccctatgtttaccattaccatacatcctcatatttcatacagaacacatcaactaagtgtctgtctgttcttcttccctccat 28247006  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||  | | |||| ||||||| || |||||||||||||||    
T  28247007 tttcacttgtccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagattttgtttgttttgaaggtaactttgttcatcttcttctc 28247106  T
Q  183 ctttttctct 192  Q
    ||||||||||    
T  28247107 ctttttctct 28247116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 45463914 - 45464123
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  45463914 tgcaattccttttttacccctatgtttgtcattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtctgtttttcttccctccat 45464013  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | | |||| ||||||| ||||||||||||||||||    
T  45464014 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtatgttttgaaggtaacttcgttcatcttcttctc 45464113  T
Q  183 ctttttctct 192  Q
    ||||||||||    
T  45464114 ctttttctct 45464123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 34691239 - 34691449
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||                  ||||     
T  34691239 tgcaattccatttttacccctatgttttccactaccatacatcctcacatttcatacagaacacatcaactaagtcactgtttgttcttcttccctccat 34691338  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || | ||| |  ||||| ||||||| ||||||||||||||||||    
T  34691339 tttcacttctccaagatcatcatcctctccggtgatcaagcttgcattttttaaggaagaattcgttcattttgaaggtaacttcgttcatcttcttctc 34691438  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  34691439 ctttttctctg 34691449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 48303529 - 48303334
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagt------------------catccac 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||                  | ||||     
T  48303529 tgcaattccttttttacccctatgtttcccattaccatacatcctcacatttcatacagaacacatcaattaagtccctgtctgttcttcttccctccat 48303430  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttct 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||| |||| ||||||| || |||||||||||    
T  48303429 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcattttagaaggaagatttcgtctgttttgaaggtaactttgttcatcttct 48303334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 4322452 - 4322248
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca---------------tccacttt 85  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||                |||| |||    
T  4322452 tgcaattccttttttacccctatgtttgccattaccatacatgctcacctttcatacagaacacatcaactaagtccctgtctgttcttccctccatttt 4322353  T
Q  86 cacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctcctt 185  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||| ||| |||| ||||||| ||||||||||   ||||||||    
T  4322352 cacttctccaagatcatcatcctctccggcaatcaagattgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatc---ttctcctt 4322256  T
Q  186 tttctctg 193  Q
    ||||||||    
T  4322255 tttctctg 4322248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 41944818 - 41945028
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||||||||                   ||||     
T  41944818 tgcaattccttttttacccctatgttttccattaccataaatcctcacattttatacagaacacatcaactaagtccctgtctttttttcttccctccat 41944917  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||||||||| || ||||| ||| |||| ||||||| ||||||||||||||||||    
T  41944918 tttcacttctccaagatcatcattctctctggtgatcaagcttgcatttttgaaggaagatttcgtctgttttgaaggtaacttcgttcatcttcttctc 41945017  T
Q  183 ctttttctctg 193  Q
    |||||||||||    
T  41945018 ctttttctctg 41945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 5783608 - 5783807
Alignment:
Q  1 tgcaattccttttttacccctatgtttcccattactatacatcctcacatttcatacagaacacatcaactaagtca------------------tccac 82  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||                   ||||     
T  5783608 tgcaattacttttttacccctatgtttgccattaccatacatcctcatatttcatacagaacacatcaactaagtccctgtttgttcttcttccctccat 5783707  T
Q  83 tttcacttctccaagatcatcatcctctccggcgatcaagcttgcatttttgaagaaatatttcatctattttaaaggtaatttcgttcatcttcttctc 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||  ||| ||||||| ||||||||||||||||||    
T  5783708 tttcacttctccaagatcatcatcctctccggcgatcaagattgcatttttgaaggaagatttcgtctgctttgaaggtaacttcgttcatcttcttctc 5783807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 31801996 - 31802036
Alignment:
Q  78 tccactttcacttctccaagatcatcatcctctccggcgat 118  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  31801996 tccactttcactcctccaaaatcatcatcatctccggcgat 31802036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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