View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_4 (Length: 544)
Name: NF4060_low_4
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 54095 - 54606
Alignment:
| Q |
18 |
gatagtgcaagagcaaagtgggctcgatgccactagcttttttctgtattggtttgggtaagtggggagttatgttaatcttttagccaacattttaatg |
117 |
Q |
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| T |
54095 |
gatagtgcaagagcaaagtgggctcgatgccactagcttttttctgtattggtttgggtaagtggggagttatgttaatcttttagccaacattttaatg |
54194 |
T |
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| Q |
118 |
cacctatatattgtctttggaggatgacaattttgaaatggttttgcaattgcagggcccctggcttcaacagtaaaacatgtttgagacatgtctcatc |
217 |
Q |
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| T |
54195 |
cacctatatattgtctttgtaggatgacaattttgaaatggttttgcaattgcagggcccctggcttcaacagtaaaacatgtttgagacatgtctcatc |
54294 |
T |
|
| Q |
218 |
aaaacaaaggtgcatggttgttaaaatagaacaaattttttcacatgtttgnnnnnnnnaagtgcaaaattttttaaaaggtgaacttaatgatgcagaa |
317 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54295 |
aaaacaaaggtgcatgattgttaaaatagaacaaattttttcacatgtttgttttttttaagtgcaaaattttttaaaaggtgaacttaatgatgcagaa |
54394 |
T |
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| Q |
318 |
agaaatcctctggtcacccaaaagaaaaagaaaggtactttattaatctatcaatgcagagacagaaacatatgtgcataatttcttgttgactttttag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395 |
-gaaatcctctggtcacccaaaagaaaaagaaaggtactttattaatctatcaatgcagagacagaaacatatgtgcataatttcttgttgactttttag |
54493 |
T |
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| Q |
418 |
ttgagctttcattatgtttcatacgcacaagcatcgcatcatattagttggatctcctctgaaagtcatctcctaaaagtgcgaaagcactgttctgtca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54494 |
ttgagctttcattatgtttcatacgcacaagcatcgcatcatattagttggatctcctctgaaagtcatctcctaaaagtgcgaaagcactgttctgtca |
54593 |
T |
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| Q |
518 |
cttaacatgtttg |
530 |
Q |
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| T |
54594 |
cttaacatgtttg |
54606 |
T |
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