View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_5 (Length: 468)
Name: NF4060_low_5
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 23929911 - 23929475
Alignment:
| Q |
14 |
acatcatcaaacatctctgataactctgtatcatcataatatacagctgaaaccttgttacttctcagatcttcttcatgtgaaataccaatatcattac |
113 |
Q |
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| T |
23929911 |
acatcatcaaacatctctgataactctgtatcatcataataaacagctgaaaccttgtttcttctcagatcttcttcatgtgaaataccaatatcattac |
23929812 |
T |
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| Q |
114 |
aattcatcaaataacctctcttttcccctaaacctctagaacccaaaacaaaactaccctcttcattcatctgccaaacatcactcggagaaccgaaaaa |
213 |
Q |
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| T |
23929811 |
aattcatcaaataacctctcttttcccctaaacctctagaacccaaaacaaaactaccctcttcattcatcttccaaacatcactcggagaaccgaaaaa |
23929712 |
T |
|
| Q |
214 |
acctcgtggatcataaggaattttatcaaacacctcatatgcattattttccggcgaatcgcaatcaacaacagaattatcagtattataactacaatta |
313 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23929711 |
acctcgcggatcataaggaattttatcaaacacctcatatgcattattttccggcgaatcgcaatcaacaacagaattatcagtattataactacaatta |
23929612 |
T |
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| Q |
314 |
ctatagctctcagaactagaactagttccagttactgatcctaaaacatcataaaacgatttttcagcagcttgaagcttgaaacaatcttgcaacatac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23929611 |
ctatagctctcagaactagaactagttccagttactgatcctaaaacatcataaaacgatttttcagcagcttgaagcttcaaacaatcttgcaacatac |
23929512 |
T |
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| Q |
414 |
aaggctttgtctccaaatcttcttcatccataagaat |
450 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
23929511 |
aaggctttgtctccaaatcttcttcatccataagaat |
23929475 |
T |
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