View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4060_low_6 (Length: 427)
Name: NF4060_low_6
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 33399107 - 33398682
Alignment:
| Q |
1 |
acaatggggtttgcatttgttttcctgtccaataataaaatcatgttgaattatttgatatcaaagaaaattgtgtactggtgttactatgatttatggt |
100 |
Q |
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| T |
33399107 |
acaatggggtt-gcatttgttttcctgtccaataataaaatcatgttgaattatttgatatcaaagaaaattgtgtactggtgttactatgatttatggt |
33399009 |
T |
|
| Q |
101 |
aaataaagttatcttaaaactaacattgaacaaagtagaactttcttattagtattgcaaagtagacaggtttttgaatggcttgtcgagccggacagcg |
200 |
Q |
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| T |
33399008 |
aaataaagttatcttaaaactaacattgaacaaagtagaactttcttattagtattgcaaagtagacaggtttttgaatggcttgtcgagccggacagcg |
33398909 |
T |
|
| Q |
201 |
acgcatagtccgcaaaaaataaaacaccgcatagctcaagcctggccttgtcaagccggacagcagtgcgtgtgatagtcatgtgacctgtgtcatctcc |
300 |
Q |
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| T |
33398908 |
acgcatagtccgcaaaaaataaaacaccgcatagctcaagcctggccttgtcaagccggacagcagtgcgtgtgatagtcatgtgacctttgtcatctcc |
33398809 |
T |
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| Q |
301 |
cgtatacaaaattcggtaactcttggataacaccccaatgaggcataccttcactata------------ttgtatgaagtctctcttatccgggacttc |
388 |
Q |
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| T |
33398808 |
cgtatacaaaattcggtaactcttggataacaccccaatgaggcataccttcactatataaacccatgtgttgtgtgaagtctctcttatccgggacttc |
33398709 |
T |
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| Q |
389 |
taggaagttttcaattacacattttgt |
415 |
Q |
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| T |
33398708 |
taggaacttttcaattacacattttgt |
33398682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 33395105 - 33394980
Alignment:
| Q |
19 |
gttttcctgtccaataataaaatcatgttgaattatttgatatcaaagaaaattgtgtactgg-tgttactatgatttatggtaaataaagttatcttaa |
117 |
Q |
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||||||| ||| |||||||||||||||| ||||||||| |||| |||||| ||||| | ||| | |||||||||||| ||||| ||| | ||||||| |
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| T |
33395105 |
gttttcccgtctaataataaaatcatgtggaattattt--tatcgaagaaagttgtgcaatggatactactatgatttaatgtaaacaaaatcatcttaa |
33395008 |
T |
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| Q |
118 |
aactaacattgaacaaagtagaactttc |
145 |
Q |
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| T |
33395007 |
aattaatattggacaaaacagaactttc |
33394980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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