View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4060_low_7 (Length: 417)
Name: NF4060_low_7
Description: NF4060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4060_low_7 |
 | |
|
| [»] scaffold0214 (4 HSPs) |
| | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 153 - 401
Target Start/End: Complemental strand, 7153644 - 7153396
Alignment:
| Q |
153 |
gttcgtatttaaactcaggacttacaacttcttatctcttaacgtcgtaagaccagttgaactactcaatcgttcaagtcttaatgatagtttaaatcaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7153644 |
gttcgtatttaaactcaggacttacaacttcttatctcttaacgtcgtaagaccagttgaactactcaaccgttcaagtcttaatgatagtttaaatcaa |
7153545 |
T |
|
| Q |
253 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttttagaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7153544 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttctagaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
7153445 |
T |
|
| Q |
353 |
gcaaccattgatatctttgcataatagtgagaagtaagaagcaaatagt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7153444 |
gcaaccattgatatctttgcataatagtgagaagtaagaagcaaatagt |
7153396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 7153720 - 7153675
Alignment:
| Q |
80 |
tgtccgctttttctactgcacttatgtgtagaattatgaatagtac |
125 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7153720 |
tgtccgctatttctactgcactaatgtgtagaattatgaatagtac |
7153675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 153 - 401
Target Start/End: Original strand, 24592 - 24840
Alignment:
| Q |
153 |
gttcgtatttaaactcaggacttacaacttcttatctcttaacgtcgtaagaccagttgaactactcaatcgttcaagtcttaatgatagtttaaatcaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24592 |
gttcgtatttaaactcaggacttacaacttcttatctcttaacgtcataagaccagttgaactactcaaccgttcaagtcttaatgatagtttaaatcaa |
24691 |
T |
|
| Q |
253 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttttagaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24692 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttctggaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
24791 |
T |
|
| Q |
353 |
gcaaccattgatatctttgcataatagtgagaagtaagaagcaaatagt |
401 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24792 |
gtaaccgttgatatctttgcataatagtgagaagtaagaagcaaatagt |
24840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 153 - 401
Target Start/End: Original strand, 4427 - 4675
Alignment:
| Q |
153 |
gttcgtatttaaactcaggacttacaacttcttatctcttaacgtcgtaagaccagttgaactactcaatcgttcaagtcttaatgatagtttaaatcaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4427 |
gttcgtatttaaactcaggacttacaacttcttatctcttaacgtaataagaccagttgaactactcaaccgttcaagtcttaatgatagtttaaatcaa |
4526 |
T |
|
| Q |
253 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttttagaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4527 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttctggaagtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
4626 |
T |
|
| Q |
353 |
gcaaccattgatatctttgcataatagtgagaagtaagaagcaaatagt |
401 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4627 |
gtaaccgttgatatctttgcataatagtgagaagtaagaagcaaatagt |
4675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 4349 - 4398
Alignment:
| Q |
76 |
cgtctgtccgctttttctactgcacttatgtgtagaattatgaatagtac |
125 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
4349 |
cgtctgtccgctttgtctactgtgctaatgtgtagaattatgaatagtac |
4398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 24514 - 24563
Alignment:
| Q |
76 |
cgtctgtccgctttttctactgcacttatgtgtagaattatgaatagtac |
125 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
24514 |
cgtctgtccgctttgtctactgtgctaatgtgtagaattatgaatagtac |
24563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 153 - 401
Target Start/End: Complemental strand, 29569 - 29321
Alignment:
| Q |
153 |
gttcgtatttaaactcaggacttacaacttcttatctcttaacgtcgtaagaccagttgaactactcaatcgttcaagtcttaatgatagtttaaatcaa |
252 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
29569 |
gttcgaatttaaactcaggacttacaacttcttatctcttaacatcgtaagaccaattgaactactcaaccgttcatgtcttaataatagtttaaatcaa |
29470 |
T |
|
| Q |
253 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttttagaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29469 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttctagaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtact |
29370 |
T |
|
| Q |
353 |
gcaaccattgatatctttgcataatagtgagaagtaagaagcaaatagt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29369 |
gcaaccattgatatctttgcataatagtgagaagtaagaagcaaatagt |
29321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 29707 - 29603
Alignment:
| Q |
17 |
cacagaatataaaacacataaaatcttcttcctactgccttgtcataaactcccgtgttcgtctgtccgctttttctactgcacttatgtgtagaattat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | |||||||||||||| |
|
|
| T |
29707 |
cacagaatataaaacacataaaatcttcttcctactgccttgtcataaactcccgtattcgtctgtccgctttttctagtacgttaatgtgtagaattat |
29608 |
T |
|
| Q |
117 |
gaata |
121 |
Q |
| |
|
||||| |
|
|
| T |
29607 |
gaata |
29603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 153 - 401
Target Start/End: Original strand, 25330978 - 25331226
Alignment:
| Q |
153 |
gttcgtatttaaactcaggacttacaacttcttatctcttaacgtcgtaagaccagttgaactactcaatcgttcaagtcttaatgatagtttaaatcaa |
252 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
25330978 |
gttcgtatttaaactcaggatttacatcttcttatctcttaacgtcgtaagatcagttgaactactcaaccgctcaagtcttaatgatagtttaaatcaa |
25331077 |
T |
|
| Q |
253 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttttagaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25331078 |
ttatgtgttttatgtaattaaaagtatttaagtgtttcaatttctggaggtgtttttatttgataatggaatgaatttttgtctaaacaacaaaagtagt |
25331177 |
T |
|
| Q |
353 |
gcaaccattgatatctttgcataatagtgagaagtaagaagcaaatagt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25331178 |
gcaaccattgatatctttgcataatagtgagaaataagaagcaaatagt |
25331226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 25330901 - 25330950
Alignment:
| Q |
76 |
cgtctgtccgctttttctactgcacttatgtgtagaattatgaatagtac |
125 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
25330901 |
cgtctgtccgctttttctactgcgctaatgtgtagaattataaatagtac |
25330950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 41476113 - 41476077
Alignment:
| Q |
65 |
actcccgtgttcgtctgtccgctttttctactgcact |
101 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| |
|
|
| T |
41476113 |
actcccgtgtccatctgtccgctttttctactgcact |
41476077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University