View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4061_high_14 (Length: 439)
Name: NF4061_high_14
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 29 - 432
Target Start/End: Complemental strand, 2169484 - 2169081
Alignment:
| Q |
29 |
ataaaattgcaatttgtaaagcagagtacataccaaaaatgacttgaacttcaagctcatttctagcctcacattaagcacacacaaaacatacattaag |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2169484 |
ataaaattgcaatttgtaaagcagagtacataccaaaaatgacttaaacttcaagctcatttctagcctcacattaagcacacacaaaacacacattaag |
2169385 |
T |
|
| Q |
129 |
cattgcttgaataattcctaatcctacg--tatcacatatttttgttataatattgtttcaataatttatctcataagtctaaagtcttaccccacannn |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2169384 |
cattgcttgaataattcctaatcctacgtatatcacggatttttgttataatattgtttcaataatttatctcataagtctaaagtcttaccccacattt |
2169285 |
T |
|
| Q |
227 |
nnnngttcttactatagcatttcgccctaccctctgttgcattgtagtacaagaatcatcaatgtgtgatcataagaaagta---atgatattgccatca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2169284 |
ttttgttcttactatagcatttcgccctaccctctgttgcattgtagtacaaga---atcaatgtgtgatcataagaaagtaatgatgatattgccatca |
2169188 |
T |
|
| Q |
324 |
aaagataagattacattttccatgaaaacaacttcaagaggtgtgacgcaaaggattattactaaggaacaattttgaggtatgctatagtcattttcca |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2169187 |
aaagataagattacattttccatgaaaacaacttcaaca--agtgacgcaaaggattattactaaggaacaattttgaggtatgctatagtcattttcca |
2169090 |
T |
|
| Q |
424 |
cctttgctt |
432 |
Q |
| |
|
||||||||| |
|
|
| T |
2169089 |
cctttgctt |
2169081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University