View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_high_16 (Length: 427)
Name: NF4061_high_16
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 193 - 410
Target Start/End: Original strand, 11020992 - 11021209
Alignment:
| Q |
193 |
aaccaactattagcaaatttagaaaaacttcccacaaagacctcaattcagcatagtaatcattaacagaatttgtaccttgcttcaggttgttgatctt |
292 |
Q |
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| T |
11020992 |
aaccaactattagcaaatttagaaaaacttcccacaaagacctcaattcagcatagtaatcattaacagaatttgtaccttgcttcaggttgttgatctt |
11021091 |
T |
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| Q |
293 |
agttttgagtttccaaacacgaatgccatcagttttacttaaacgctcattcaattctctccatacatcagaaacaatatcaatgtatagaatactatgt |
392 |
Q |
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| T |
11021092 |
agttttgagtttccaaacacgaatgcgatcagttttacttaaacgctccttcaattctctccatacatcagaaacaatatcaatgtatagaatactatgt |
11021191 |
T |
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| Q |
393 |
gcaattgaatcagaaaca |
410 |
Q |
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| T |
11021192 |
gcagttgaatcagaaaca |
11021209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 63 - 219
Target Start/End: Original strand, 11020774 - 11020928
Alignment:
| Q |
63 |
tggttttactgctcattaaactaatctctacagttgctcgcatagaatattttagttcacacaaaagaaaatgtccattccattcaaaaagaagacaaca |
162 |
Q |
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| T |
11020774 |
tggttttactgctcattaaactaatctctacagttgctcgcatagaatattttagttcacacaaaa--aaatgtccattccattcaaaaagaagacaaca |
11020871 |
T |
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| Q |
163 |
tgagtcgactgtgtcttaacacatgcataaaaccaactattagcaaatttagaaaaa |
219 |
Q |
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| T |
11020872 |
tgagtcgactgtgtcttaacacatgcataaaaccaactattagcaaatttagaaaaa |
11020928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 11036788 - 11036921
Alignment:
| Q |
63 |
tggttttactgctcattaaactaatctctacagttgctcgcatagaatattttagttcacacaaaagaaaa--tgtccattccattcaaaaagaagacaa |
160 |
Q |
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| T |
11036788 |
tggttttactactccttaaactaatctctacagttgctcgcatagaatattt-agatcacaccaaaaaaaacatgtccattccattccaaaagaagacaa |
11036886 |
T |
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| Q |
161 |
catgagtcgactgtgtcttaacacatgcataaaac |
195 |
Q |
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| T |
11036887 |
catgagtcgactgtgtcttaatacatgcataaaac |
11036921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 11020616 - 11020670
Alignment:
| Q |
11 |
catcactttgttccttaacaagactggataaatagttggacaattgtgattttgg |
65 |
Q |
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| T |
11020616 |
catcactttgttccttaacaagactggataaatagttggacaattgtgattttgg |
11020670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 11027452 - 11027504
Alignment:
| Q |
11 |
catcactttgttccttaacaagactggataaatag-ttggacaattgtgattt |
62 |
Q |
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| T |
11027452 |
catcactttgttccttaacaagactcgataaatagatgggacaattgtgattt |
11027504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 397
Target Start/End: Complemental strand, 13888625 - 13888462
Alignment:
| Q |
234 |
ctcaattcagcatagtaatcattaacagaatttgtaccttgcttcaggttgttgatcttagttttgagtttccaaacacgaatgccatcagttttactta |
333 |
Q |
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| T |
13888625 |
ctcaattcagtataataatcattgacaaaactagtaccttgcttgagattattgatctcagacttgagcttccaaacaagaatgcgatcagctttgctaa |
13888526 |
T |
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| Q |
334 |
aacgctcattcaattctctccatacatcagaaacaatatcaatgtatagaatactatgtgcaat |
397 |
Q |
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| T |
13888525 |
aatgctcctttaactctttccaaacatcataaacgttgtcaatatacacaatactctgtgcaat |
13888462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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