View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4061_high_18 (Length: 370)

Name: NF4061_high_18
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4061_high_18
NF4061_high_18
[»] chr6 (2 HSPs)
chr6 (18-345)||(35162213-35162532)
chr6 (62-104)||(12838078-12838120)
[»] chr3 (23 HSPs)
chr3 (18-210)||(29920224-29920399)
chr3 (18-210)||(29969377-29969552)
chr3 (18-210)||(29927438-29927613)
chr3 (18-210)||(29976592-29976767)
chr3 (47-94)||(30056620-30056668)
chr3 (223-258)||(29918725-29918760)
chr3 (223-258)||(29929091-29929126)
chr3 (223-258)||(29967878-29967913)
chr3 (223-258)||(29978245-29978280)
chr3 (50-110)||(29922718-29922780)
chr3 (50-110)||(29971871-29971933)
chr3 (62-104)||(30050179-30050221)
chr3 (62-104)||(30082056-30082098)
chr3 (167-224)||(29861449-29861506)
chr3 (62-102)||(30069441-30069481)
chr3 (64-104)||(30073051-30073091)
chr3 (64-104)||(30086822-30086862)
chr3 (47-92)||(25481281-25481327)
chr3 (47-95)||(30132678-30132727)
chr3 (47-95)||(30137475-30137524)
chr3 (47-95)||(30143625-30143674)
chr3 (47-95)||(30147026-30147075)
chr3 (50-86)||(12127245-12127281)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 35162532 - 35162213
Alignment:
Q  18 acttatgagcttagttagctttgtacgtagtattgcattagttctttcttgcatgcatcaatttatagacaaaataaatgcttttgcacgatccatcgat 117  Q
    ||||||||||||||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35162532 acttatgagcttagttagccttgta----gtattgcattagttctttcttgcatgcatcaatttatagacaaaataaatgcttttgcatgatccatcgat 35162437  T
Q  118 ccataaattgcttatacatgatgtggttaatgacaatatgagaattataatattgataatgtttcccttattaaattcagaaacaatgaacacaagatta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162436 ccataaattgcttatacatgatgtggttaatgacaatatgagaattataatattgataatgtttcccttattaaattcagaaacaatgaacacaagatta 35162337  T
Q  218 atttaattattaaattcagaaaattgtacaatacatgagcttatacatgttgggaaaggacacataaaagatgcttatacatgtccatccaattaaactt 317  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  35162336 atttaattattaaattcagaaaattgtacaacacatgagcttatgcatgttgggaaaggacacataaaagatgcttatacatgtccatcc----aaactt 35162241  T
Q  318 ttgtcaaatattggtttactattcatat 345  Q
    ||||||||||||||||||||||||||||    
T  35162240 ttgtcaaatattggtttactattcatat 35162213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 12838078 - 12838120
Alignment:
Q  62 tttcttgcatgcatcaatttatagacaaaataaatgcttttgc 104  Q
    ||||||||||||| |||||||||||||||  ||||||||||||    
T  12838078 tttcttgcatgcaccaatttatagacaaataaaatgcttttgc 12838120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 29920399 - 29920224
Alignment:
Q  18 acttatgagcttagttagctttgtacgtagtattgcattagttctttcttgcatgcatcaatttatagacaaaataaatgcttttgcacgatccatcgat 117  Q
    ||||||||||||||||||| |||||    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  29920399 acttatgagcttagttagccttgta----gtattgcattagttctttcttgcatgcaccaatttatagacaaaataaatggttttgcatgatccatcgat 29920304  T
Q  118 ccataaattgcttatacatgatgtggttaatgacaatatgagaattataatattgataatgtttcccttattaaattcagaaacaatgaacac 210  Q
    ||  |||| ||           | |||| | ||||  ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  29920303 ccggaaatcgc-----------gcggttgaggaca--atgagaattattatatatataatgtttcccttattaaattcagaaacaatgaacac 29920224  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 29969552 - 29969377
Alignment:
Q  18 acttatgagcttagttagctttgtacgtagtattgcattagttctttcttgcatgcatcaatttatagacaaaataaatgcttttgcacgatccatcgat 117  Q
    ||||||||||||||||||| |||||    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  29969552 acttatgagcttagttagccttgta----gtattgcattagttctttcttgcatgcaccaatttatagacaaaataaatggttttgcatgatccatcgat 29969457  T
Q  118 ccataaattgcttatacatgatgtggttaatgacaatatgagaattataatattgataatgtttcccttattaaattcagaaacaatgaacac 210  Q
    ||  |||| ||           | |||| | ||||  ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  29969456 ccggaaatcgc-----------gcggttgaggaca--atgagaattattatatatataatgtttcccttattaaattcagaaacaatgaacac 29969377  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 29927438 - 29927613
Alignment:
Q  18 acttatgagcttagttagctttgtacgtagtattgcattagttctttcttgcatgcatcaatttatagacaaaataaatgcttttgcacgatccatcgat 117  Q
    ||||||||||||||||||| |||||    |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||    
T  29927438 acttatgagcttagttagccttgta----gtattgcattagttctttcttgcatgcaccaatttatagataaaataaatggttttgcatgatccatcgat 29927533  T
Q  118 ccataaattgcttatacatgatgtggttaatgacaatatgagaattataatattgataatgtttcccttattaaattcagaaacaatgaacac 210  Q
    ||  |||| ||           | |||| | ||||  ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  29927534 ccggaaatcgc-----------gcggttgaggaca--atgagaattattatatatataatgtttcccttattaaattcagaaacaatgaacac 29927613  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 29976592 - 29976767
Alignment:
Q  18 acttatgagcttagttagctttgtacgtagtattgcattagttctttcttgcatgcatcaatttatagacaaaataaatgcttttgcacgatccatcgat 117  Q
    ||||||||||||||||||| |||||    |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||    
T  29976592 acttatgagcttagttagccttgta----gtattgcattagttctttcttgcatgcaccaatttatagataaaataaatggttttgcatgatccatcgat 29976687  T
Q  118 ccataaattgcttatacatgatgtggttaatgacaatatgagaattataatattgataatgtttcccttattaaattcagaaacaatgaacac 210  Q
    ||  |||| ||           | |||| | ||||  ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  29976688 ccggaaatcgc-----------gcggttgaggaca--atgagaattattatatatataatgtttcccttattaaattcagaaacaatgaacac 29976767  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 30056620 - 30056668
Alignment:
Q  47 gtattgcattagttc-tttcttgcatgcatcaatttatagacaaaataa 94  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30056620 gtattgcattagttcatttcttgcatgcatcaatttatagacaaaataa 30056668  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 29918760 - 29918725
Alignment:
Q  223 attattaaattcagaaaattgtacaatacatgagct 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  29918760 attattaaattcagaaaattgtacaatacatgagct 29918725  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 29929091 - 29929126
Alignment:
Q  223 attattaaattcagaaaattgtacaatacatgagct 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  29929091 attattaaattcagaaaattgtacaatacatgagct 29929126  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 29967913 - 29967878
Alignment:
Q  223 attattaaattcagaaaattgtacaatacatgagct 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  29967913 attattaaattcagaaaattgtacaatacatgagct 29967878  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 29978245 - 29978280
Alignment:
Q  223 attattaaattcagaaaattgtacaatacatgagct 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  29978245 attattaaattcagaaaattgtacaatacatgagct 29978280  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 29922780 - 29922718
Alignment:
Q  50 ttgcattagttc-tttctt-gcatgcatcaatttatagacaaaataaatgcttttgcacgatc 110  Q
    |||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||| ||||    
T  29922780 ttgcattagttcatttctttgcatgcaacaattcatagacaaaataaatgcttttgcatgatc 29922718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 29971933 - 29971871
Alignment:
Q  50 ttgcattagttc-tttctt-gcatgcatcaatttatagacaaaataaatgcttttgcacgatc 110  Q
    |||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||| ||||    
T  29971933 ttgcattagttcatttctttgcatgcaacaattcatagacaaaataaatgcttttgcatgatc 29971871  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 30050179 - 30050221
Alignment:
Q  62 tttcttgcatgcatcaatttatagacaaaataaatgcttttgc 104  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  30050179 tttcttgcatgcatcaatttatagacaaaattaatgtttttgc 30050221  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 30082056 - 30082098
Alignment:
Q  62 tttcttgcatgcatcaatttatagacaaaataaatgcttttgc 104  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  30082056 tttcttgcatgcatcaatttatagacaaaattaatgtttttgc 30082098  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 29861449 - 29861506
Alignment:
Q  167 atattgataatgtttcccttattaaattcagaaacaatgaacacaagattaatttaat 224  Q
    ||||| |||||||||||||||  |||||||||| ||| | ||||||||||||||||||    
T  29861449 atattaataatgtttcccttaagaaattcagaagcaaggcacacaagattaatttaat 29861506  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 30069441 - 30069481
Alignment:
Q  62 tttcttgcatgcatcaatttatagacaaaataaatgctttt 102  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  30069441 tttcttgcatgcatcaatttatagacaaaattaatgttttt 30069481  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 30073051 - 30073091
Alignment:
Q  64 tcttgcatgcatcaatttatagacaaaataaatgcttttgc 104  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  30073051 tcttgcatgcatcaatttatagacaaaattaatgtttttgc 30073091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 30086822 - 30086862
Alignment:
Q  64 tcttgcatgcatcaatttatagacaaaataaatgcttttgc 104  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  30086822 tcttgcatgcatcaatttatagacaaaattaatgtttttgc 30086862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 25481327 - 25481281
Alignment:
Q  47 gtattgcattagttc-tttcttgcatgcatcaatttatagacaaaat 92  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||||    
T  25481327 gtattgcattggttcatttcttgcatgcaccaatttatagacaaaat 25481281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 30132678 - 30132727
Alignment:
Q  47 gtattgcattagttc-tttcttgcatgcatcaatttatagacaaaataaa 95  Q
    |||||||| |||||| |||||||||| || ||||||||||||||||||||    
T  30132678 gtattgcactagttcatttcttgcattcaacaatttatagacaaaataaa 30132727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 30137475 - 30137524
Alignment:
Q  47 gtattgcattagttc-tttcttgcatgcatcaatttatagacaaaataaa 95  Q
    |||||||| |||||| |||||||||| || ||||||||||||||||||||    
T  30137475 gtattgcactagttcatttcttgcattcaacaatttatagacaaaataaa 30137524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 30143625 - 30143674
Alignment:
Q  47 gtattgcattagttc-tttcttgcatgcatcaatttatagacaaaataaa 95  Q
    |||||||| |||||| |||||||||| || ||||||||||||||||||||    
T  30143625 gtattgcactagttcatttcttgcattcaacaatttatagacaaaataaa 30143674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 30147026 - 30147075
Alignment:
Q  47 gtattgcattagttc-tttcttgcatgcatcaatttatagacaaaataaa 95  Q
    |||||||| |||||| |||||||||| || ||||||||||||||||||||    
T  30147026 gtattgcactagttcatttcttgcattcaacaatttatagacaaaataaa 30147075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 12127281 - 12127245
Alignment:
Q  50 ttgcattagttctttcttgcatgcatcaatttataga 86  Q
    |||||||||||| || |||||||||||||||||||||    
T  12127281 ttgcattagttcattgttgcatgcatcaatttataga 12127245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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