View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_high_19 (Length: 354)
Name: NF4061_high_19
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 10873900 - 10874173
Alignment:
| Q |
17 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873900 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
10873999 |
T |
|
| Q |
117 |
taaaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactg |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874000 |
tagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactg |
10874099 |
T |
|
| Q |
217 |
tgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgattt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874100 |
tgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgattt |
10874173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 10878971 - 10879244
Alignment:
| Q |
17 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878971 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
10879070 |
T |
|
| Q |
117 |
taaaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactg |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879071 |
tagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactg |
10879170 |
T |
|
| Q |
217 |
tgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgattt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879171 |
tgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgattt |
10879244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 10884042 - 10884315
Alignment:
| Q |
17 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884042 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
10884141 |
T |
|
| Q |
117 |
taaaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactg |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884142 |
tagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactg |
10884241 |
T |
|
| Q |
217 |
tgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgattt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884242 |
tgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctctgattt |
10884315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 10866405 - 10866139
Alignment:
| Q |
17 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866405 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
10866306 |
T |
|
| Q |
117 |
taaaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactg |
216 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866305 |
tagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtacagtattgactg |
10866206 |
T |
|
| Q |
217 |
tgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttct |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866205 |
tgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttct |
10866139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 10887971 - 10888252
Alignment:
| Q |
19 |
gatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgta |
118 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |||||||| ||||||||||||| |
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| T |
10887971 |
gatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgta |
10888070 |
T |
|
| Q |
119 |
aaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagtaca------------ |
206 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |||| |
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| T |
10888071 |
gaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaagaag |
10888170 |
T |
|
| Q |
207 |
---gtattgactgtgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacgcccatttctct |
285 |
Q |
| |
|
|| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
10888171 |
gttgttgtgactgtgaatcctgctgctgcctttggttcttcttctcatttttgcttattttctgctgaacgtccatctctct |
10888252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 39675978 - 39675791
Alignment:
| Q |
17 |
aggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtg |
116 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||||| || | |||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| |
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| T |
39675978 |
aggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtg |
39675879 |
T |
|
| Q |
117 |
taaaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
204 |
Q |
| |
|
|| |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
39675878 |
tagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagta |
39675791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 10045968 - 10045784
Alignment:
| Q |
20 |
atgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtaa |
119 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| | ||||||||| ||||||||||||| | || |||||||||||||||||| || || |||||||| |
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| T |
10045968 |
atgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtgg |
10045869 |
T |
|
| Q |
120 |
aggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
204 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| || |||||||||||||| ||||| ||||||| | ||||||||||| |
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|
| T |
10045868 |
aggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagta |
10045784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 10874194 - 10874227
Alignment:
| Q |
311 |
gagttcagttcagtttaggggatgattgatgatg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10874194 |
gagttcagttcagtttaggggatgattgatgatg |
10874227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 10879265 - 10879298
Alignment:
| Q |
311 |
gagttcagttcagtttaggggatgattgatgatg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10879265 |
gagttcagttcagtttaggggatgattgatgatg |
10879298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 10884336 - 10884369
Alignment:
| Q |
311 |
gagttcagttcagtttaggggatgattgatgatg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
10884336 |
gagttcagttcagtttaggggatgattgatgatg |
10884369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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