View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4061_high_27 (Length: 251)
Name: NF4061_high_27
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28192075 - 28191838
Alignment:
| Q |
1 |
ttgcttcgattacaaacacctaaattgagtacaataaaaatcacaactaaaatttctaccgtatgtactttgtactcaaaacacattaaggttnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28192075 |
ttgcttcgattacaaacacctaaattgagtacaataaaaatcacaactaaaatttctaccgtatgtactttgtacccaaaacacattaaggttaaaaaaa |
28191976 |
T |
|
| Q |
101 |
ccacgtgacgtgtagtctcaaatttcgtctctataattaatgtttgcaatttttgtgtcacacagaaagaacattatagtaccccttattaatttgatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28191975 |
ccacgtgacgtgtagtctcaaatttcgtctctataattaatgtttgcaatttctgtgtcacacagaaagaacattatagtactccttattaatttgatac |
28191876 |
T |
|
| Q |
201 |
aaaatagtgaaattaaaaacttcaccctcttctgtcct |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28191875 |
aaaatagtgaaattaaaaacttcaccctcttctgtcct |
28191838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University