View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_1 (Length: 832)
Name: NF4061_low_1
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 12 - 814
Target Start/End: Original strand, 3990304 - 3991106
Alignment:
| Q |
12 |
gagatgaaagagacagcttttatcatgcagaatgtttcagagaggtaacaccaccttttgattttcttcactcttggtatgcatgcagctttaaaccttt |
111 |
Q |
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| T |
3990304 |
gagatgaaagagacagcttttatcatgcagaatgtttcagagaggtaacaccaccttttgattttcttcactcttggtatgcatgcagctttaaaccttt |
3990403 |
T |
|
| Q |
112 |
atttgatgcaggagtttgattgttatggatgaacttggtagggctacttcttcatctgatgggtttgcaatagcttggagttgctgcgagcatcttttgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990404 |
atttgatgcaggagtttgattgttatggatgaacttggtagggctacttcttcatctgatgggtttgcaatagcttggagttgctgcgagcatcttttgt |
3990503 |
T |
|
| Q |
212 |
cactaaaagcgtaattgttgcttcnnnnnnnnnnnnnnattatgataggcatttttaacaaactttatggcatggaattcttgtaactaataaatcaaag |
311 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990504 |
cactaaaagcgtaattgttgcttctttttattttttttattatgataggcatttttaacaaactttatggcatggaattcttgtaactaataaatcaaag |
3990603 |
T |
|
| Q |
312 |
gtctccgttagcttttcaatttcccattatttcagtggaagttaaattgaaaagaaataacagacacaaacactcgaaaacttggagctaaaatttcctt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990604 |
gtctccgttagcttttcaatttcccattatttcagtggaagttaaattgaaaagaaataacagacacaaacactcgaaaacttggagctaaaatttcctt |
3990703 |
T |
|
| Q |
412 |
cactgctttggtattgaattgtttatagtaagacaactggagactgcaagagttttccccatcaaacaaacatgtttatatattggacgatcatgtcttc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3990704 |
cactgctttggtattgaattgtttatagtaagacaactggagactgcaagagttttccccatcaaacaaacatgtttatatattggacaatcatgtcttc |
3990803 |
T |
|
| Q |
512 |
tgagccatgtttttaatcttccttcaggtatacgatatttgccactcatatggagaatatagcggaattagcaacaatctatcccaacgtgaaaattctc |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3990804 |
tgagccatgtttttaatcttccttcaggtatacgatatttgccactcatatggagaatatagcggaattagcaacaatctatcccaacgtgaaaattctc |
3990903 |
T |
|
| Q |
612 |
cactttcatgtcgaattaaaaaacaaccatttggagttcaaggtagtatctctgttttttctcttgcattggatgactatctgcaaactaatattcttct |
711 |
Q |
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| T |
3990904 |
cactttcatgtcgaattaaaaaacaaccatttggagttcaaggtagtatctctgttttttctcttgcattggatgactatctgcaaactaatattcttct |
3991003 |
T |
|
| Q |
712 |
ttacttagtttcaacttaaggaaggaccgaaacatatcccccattatggccttctcttagcagaagttgcaggattaccaacctccgttattgagaccgc |
811 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3991004 |
ttacttagtttcaacttaaggaaggaccgaaacatatcccccattatggccttctcttagcagaagtggcaggattaccaacctccgttattgagaccgc |
3991103 |
T |
|
| Q |
812 |
cag |
814 |
Q |
| |
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||| |
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| T |
3991104 |
cag |
3991106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 719 - 793
Target Start/End: Complemental strand, 17936062 - 17935988
Alignment:
| Q |
719 |
gtttcaacttaaggaaggaccgaaacatatcccccattatggccttctcttagcagaagttgcaggattaccaac |
793 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||| |
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| T |
17936062 |
gtttcaacttaaggagtgaccgaaacatagcccccattatggccttctcttcgcataagtgaaaggattaccaac |
17935988 |
T |
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