View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4061_low_11 (Length: 458)
Name: NF4061_low_11
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_11 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 56 - 458
Target Start/End: Original strand, 364610 - 365012
Alignment:
| Q |
56 |
gcagttagttatctgttgtattattcttgtaccctattcagcttatttgcaatacaaacttgccaaactcaaggtattattgattgcaccctttaaattt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
364610 |
gcagttagttatctgttgtattattcttgtaccctattcagcttatttacaatacaaacttgccaaactcaaggtattactgattgcaccctttaaattt |
364709 |
T |
|
| Q |
156 |
cttgtttgtgttggattgaatccattgtttatttatcaattcaatttctttggctccaggatatgaaacttcaactctgtggtcaaattgatttttgttc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
364710 |
cttgtttgtgttggattgaatccattgtttatttatcaattcaatttctttggctccaggatatgaaacttcaactctgtggtcaaattgatttttgttc |
364809 |
T |
|
| Q |
256 |
ccggaacggaaaaacatccatacaagaagaggttgatgacgatgataatgcagatagtagaacaatagctttatatattgtgcttttcacattgattttg |
355 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
364810 |
ccgtaacggaaaaacatccatacaagaagaggttgatgacgatgataatgcagatagtagaacaatagctttatatattgtgcttttcacattgattttg |
364909 |
T |
|
| Q |
356 |
ccttttgtattgtacaaatatcttgattatcttcctcaaataattaatttcttgaggagaacagaaagtaacaaggaggatgtaccattaaagaagagag |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
364910 |
ccttttgtattgtacaaatatcttgattatcttcctcaaataattaatttcttgaggagaacagaaagtaacaaggaggatgtaccattaaagaagagag |
365009 |
T |
|
| Q |
456 |
ttg |
458 |
Q |
| |
|
||| |
|
|
| T |
365010 |
ttg |
365012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University