View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_13 (Length: 442)
Name: NF4061_low_13
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 116 - 428
Target Start/End: Original strand, 54179679 - 54179991
Alignment:
| Q |
116 |
gttgttggaggaaatacaaaaagaatgtgtgcgtaatctcaagataaaattacacaaaaacaaatgcaattgttaatgagcaacaacttctgcatgctaa |
215 |
Q |
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| T |
54179679 |
gttgttggaggaaatacaaaaagaatgtgtgcctaatctcaagataaaattacacaaaaacaaatgcaattgttaatgagcaacaacttctgcatgctaa |
54179778 |
T |
|
| Q |
216 |
gaatagttaccatttgtaatctcttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaatctagaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54179779 |
gaatagttaccatttgtaatctcttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaatctagaa |
54179878 |
T |
|
| Q |
316 |
cttggataacgataaacaattcttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcattgatca |
415 |
Q |
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| T |
54179879 |
cttggataacgatacacaattcttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcattgatca |
54179978 |
T |
|
| Q |
416 |
ttaccttcttctc |
428 |
Q |
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||||||||||||| |
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| T |
54179979 |
ttaccttcttctc |
54179991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 198 - 416
Target Start/End: Complemental strand, 41948893 - 41948673
Alignment:
| Q |
198 |
acaacttctgcatgctaagaatagttaccatttgtaatct--cttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatctt |
295 |
Q |
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| T |
41948893 |
acaacttttgcatggtaagaatcgtttacatttgtaatttgtcttctcattgcttcaattcttccaagaactcccttaacagctatatcaaaagcatctt |
41948794 |
T |
|
| Q |
296 |
caagtgtttctaatctagaacttggataacgataaacaattcttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaatt |
395 |
Q |
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| T |
41948793 |
caattgtctctaatctagaacctggataacgatacacaatcctcggaatgagtcttataacctcttctctcattgccaacacttcactttttgaaacatt |
41948694 |
T |
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| Q |
396 |
aagcaatgtctcattgatcat |
416 |
Q |
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| T |
41948693 |
gaacaatgtctcattaatcat |
41948673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 125 - 416
Target Start/End: Complemental strand, 41943447 - 41943159
Alignment:
| Q |
125 |
ggaaatacaaaaagaatgtgtgcgtaatctcaagataaaattacacaaaaacaaatgcaa-ttgttaatgagcaacaacttctgcatgctaagaatagtt |
223 |
Q |
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| T |
41943447 |
ggaaatacaaacagaatatg--cctaatctcaa-atcaaattacacaaaaa--aatgcaaattgttaaagggcgacaacttttgcaaggtaagaatcgtt |
41943353 |
T |
|
| Q |
224 |
accatttgtaatc-tcttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaatctagaacttggat |
322 |
Q |
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| T |
41943352 |
tacatttgtatttgtcttctcattgcttcaattcttccaagaactcccttaacagctatatcaaaagcatcttcaattgtctctaatctagaacctggat |
41943253 |
T |
|
| Q |
323 |
aacgataaacaattcttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcattgatcat |
416 |
Q |
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| T |
41943252 |
aacgatacacaatcctcggaatgagtcttataacttcttctctcattgccaacacttcactttttgaaacattgaacaatgtctcattaatcat |
41943159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 416
Target Start/End: Complemental strand, 22795405 - 22795164
Alignment:
| Q |
177 |
aaatgcaattgttaatgagcaacaacttctgcatgctaagaatagttaccatttgtaatct--cttctcattgcttcaattcttccaaggattcccttaa |
274 |
Q |
| |
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|||||||||||||| | ||||||||||| |||| |||||| | | ||||||| |||| ||| ||||| ||||||||||| ||| | |||||||| |
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| T |
22795405 |
aaatgcaattgttagaggacaacaacttctacatggaaagaattgctgacatttgtgatctaccttttcatttcttcaattctttgaagaactcccttaa |
22795306 |
T |
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| Q |
275 |
cagctacatcaaacgcatcttcaagtgtttctaatctagaacttggataacgataaacaattcttggaattagacttataacctcatttctcatagcaaa |
374 |
Q |
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||||||||||||| ||||| |||||||| || || ||||||||||||||||| || ||||| | ||||||| ||||| ||||||| |||||| | || |
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| T |
22795305 |
cagctacatcaaatgcatcatcaagtgtctccaacctagaacttggataacggtatacaatcttcggaattaatcttatgacctcatctctcatttccaa |
22795206 |
T |
|
| Q |
375 |
cacttccctttttgaaaaattaagcaatgtctcattgatcat |
416 |
Q |
| |
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|||||| |||| | | ||||| |||||||||||||||||| |
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| T |
22795205 |
cacttcgctttcttgtacattaaacaatgtctcattgatcat |
22795164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 183 - 416
Target Start/End: Complemental strand, 1211661 - 1211426
Alignment:
| Q |
183 |
aattgttaatgagcaacaacttctgcatgctaagaatagttaccatttgtaatct--cttctcattgcttcaattcttccaaggattcccttaacagcta |
280 |
Q |
| |
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||||||||| | || ||||||| |||||| ||||||| ||| |||||||||| | |||||||||||||||||||||||||| | |||||||||||||| |
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| T |
1211661 |
aattgttaaagggcgacaacttttgcatggtaagaatcgtttacatttgtaatttgtcttctcattgcttcaattcttccaagaactcccttaacagcta |
1211562 |
T |
|
| Q |
281 |
catcaaacgcatcttcaagtgtttctaatctagaacttggataacgataaacaattcttggaattagacttataacctcatttctcatagcaaacacttc |
380 |
Q |
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|||||| |||||||||| ||| ||||||||||| | |||||||||||| ||||| || ||||| || ||||||||||| | |||||| || |||||||| |
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| T |
1211561 |
tatcaaaagcatcttcaattgtctctaatctagatcctggataacgatacacaatcctcggaatgagtcttataacctcttctctcattgccaacacttc |
1211462 |
T |
|
| Q |
381 |
cctttttgaaaaattaagcaatgtctcattgatcat |
416 |
Q |
| |
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|||||||||| ||| | ||||||||||| ||||| |
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| T |
1211461 |
actttttgaaacattgaaaaatgtctcattaatcat |
1211426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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