View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4061_low_15 (Length: 438)

Name: NF4061_low_15
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4061_low_15
NF4061_low_15
[»] chr1 (3 HSPs)
chr1 (2-420)||(32148467-32148886)
chr1 (101-421)||(32139076-32139387)
chr1 (222-357)||(32127354-32127490)


Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 2 - 420
Target Start/End: Complemental strand, 32148886 - 32148467
Alignment:
Q  2 taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttt-atttaacatctcaaatggcaactctatcaatatcccatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32148886 taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc 32148787  T
Q  101 aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32148786 aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac 32148687  T
Q  201 acttcattacaatccttctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccggtcacaaaagatgt 300  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32148686 acttcattacaaccctcctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccagtcacaaaagatgt 32148587  T
Q  301 cgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagttccactgaacgtcattgtcgatctcggtggcctgtttctctgggttgat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  32148586 cgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagtcccactgaacatcatcgtcgatctcggtggcctgtttctctgggttgat 32148487  T
Q  401 tgcgaaaaccagtacatttc 420  Q
    ||||||||||||||||||||    
T  32148486 tgcgaaaaccagtacatttc 32148467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 101 - 421
Target Start/End: Complemental strand, 32139387 - 32139076
Alignment:
Q  101 aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac 200  Q
    ||||||||||||  |||||||||||||||||| ||||||||||| |||  ||         || ||||| ||| |||||||||||| | |||||| ||||    
T  32139387 aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactctagccatggctaattccaattttcaac 32139297  T
Q  201 acttcattacaatccttctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccggtcacaaaagatgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  ||||||||||||     
T  32139296 acttcattacaatccttctcctatttttcttcatttcacccactttctctcaacaatctttcaggccaaaagcccttgttctcccaatcacaaaagatgg 32139197  T
Q  301 cgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagttccactgaacgtcattgtcgatctcggtggcctgtttctctgggttgat 400  Q
     || || ||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| |||||||||||||||| |||||| ||||||||     
T  32139196 ggccacaacaaaccaatacaaagctcaaatcaaccagagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgac 32139097  T
Q  401 tgcgaaaaccagtacatttct 421  Q
    ||||||||| | |||||||||    
T  32139096 tgcgaaaacaaatacatttct 32139076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 222 - 357
Target Start/End: Complemental strand, 32127490 - 32127354
Alignment:
Q  222 tatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccg-gtcacaaaagatgtcgctaccacaaaccaataca 320  Q
    |||| ||||||||| |||| ||||||||| ||||||| ||||| || ||||| || ||||||||  ||||||||||||  ||| || |||  ||||||||    
T  32127490 tattgttcttcattacaccaactttctctcaacaatcattcagacccaaagcacttgttctccccagtcacaaaagatagcgcaacaacactccaataca 32127391  T
Q  321 aagctcaaatcaaccaaagaacaccactagttccact 357  Q
     ||||||||| ||||||||||| |||||||| |||||    
T  32127390 tagctcaaattaaccaaagaaccccactagtcccact 32127354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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