View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4061_low_17 (Length: 418)

Name: NF4061_low_17
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4061_low_17
NF4061_low_17
[»] chr4 (2 HSPs)
chr4 (59-407)||(4674048-4674390)
chr4 (139-245)||(51626285-51626391)
[»] chr1 (4 HSPs)
chr1 (173-265)||(28724708-28724800)
chr1 (138-245)||(18428120-18428226)
chr1 (201-234)||(19238840-19238873)
chr1 (186-234)||(36522262-36522310)
[»] chr3 (7 HSPs)
chr3 (138-241)||(27763781-27763884)
chr3 (138-250)||(1642657-1642769)
chr3 (163-263)||(22288273-22288373)
chr3 (197-269)||(22288553-22288625)
chr3 (150-260)||(39950253-39950363)
chr3 (139-251)||(38331178-38331290)
chr3 (138-234)||(48204289-48204385)
[»] chr5 (3 HSPs)
chr5 (138-245)||(10591983-10592090)
chr5 (163-234)||(29553606-29553677)
chr5 (131-233)||(5051657-5051760)
[»] chr7 (1 HSPs)
chr7 (162-263)||(45778902-45779003)
[»] chr6 (3 HSPs)
chr6 (162-245)||(28099299-28099382)
chr6 (167-234)||(17457073-17457140)
chr6 (173-234)||(12411215-12411276)
[»] chr8 (2 HSPs)
chr8 (162-245)||(2743989-2744072)
chr8 (215-296)||(27121805-27121886)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 59 - 407
Target Start/End: Complemental strand, 4674390 - 4674048
Alignment:
Q  59 caaacagatttatatctacacatagttgactgttagactctttagagnnnnnnnnnnnnngataacacataattttctagtgtaaatctgatatcctctg 158  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||| ||||||||||||    
T  4674390 caaacagattaatatctacacatagttgactgttagactctttagagaaaaaggaaaaaagataacacataattttctagtgtaaatatgatatcctctg 4674291  T
Q  159 catgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaat 258  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||||| |||||||| ||||||| |||    
T  4674290 catgcaactgcagtgattaatcccttaagcattgcaggatttaaatggacgacaaactctttctaaaaattttaacaccattgcatgtccaaaactaaat 4674191  T
Q  259 tcgaatctaaatcattggttaaactagaaaaaacccgtatc-atcccatccaaacgcttctttgctagataatacataattaatcacacaaaaatggaat 357  Q
    ||||| | |||||||||||||||||| ||||||     ||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4674190 tcgaacccaaatcattggttaaactaaaaaaaa-----atcaatcacatccaaacgct--tttgctagataatacataattaatcacacaaaaatggaat 4674098  T
Q  358 tagatattaacaattctgcatataatctatgagccacagccacaggttct 407  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  4674097 tagatattaacaattctgcatataatctatgaaccacagccacaagttct 4674048  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 51626285 - 51626391
Alignment:
Q  139 tgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccg 238  Q
    |||||||| | ||||||| ||  |||||||| | |||||||| ||  |||| ||  |||| |||||||||| || ||||| ||||||||||||||||| |    
T  51626285 tgtaaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactg 51626384  T
Q  239 ttgcatg 245  Q
     ||||||    
T  51626385 ctgcatg 51626391  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 28724800 - 28724708
Alignment:
Q  173 gactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatc 265  Q
    |||||||||||  | ||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||  |||||||||||||    
T  28724800 gactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatc 28724708  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 18428120 - 18428226
Alignment:
Q  138 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 237  Q
    ||||||||| | ||||||| ||  |||||||||| |||||||||||  |||||||  || | |||||||||  || ||||| |||||||||||||||||     
T  18428120 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggggc-caaatggacagcagactctccctaaaagttttaacact 18428218  T
Q  238 gttgcatg 245  Q
    | ||||||    
T  18428219 gctgcatg 18428226  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 19238840 - 19238873
Alignment:
Q  201 aaatggacgacaaactcttcctaaaagttttaac 234  Q
    |||||||||||||||||| |||||||||||||||    
T  19238840 aaatggacgacaaactctccctaaaagttttaac 19238873  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 36522262 - 36522310
Alignment:
Q  186 agcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 234  Q
    |||||||  ||||||||||||||| |||||||| ||||| |||||||||    
T  36522262 agcattgtgggactcaaatggacggcaaactctccctaagagttttaac 36522310  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 27763884 - 27763781
Alignment:
Q  138 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 237  Q
    ||||||| | ||||||||||||  |||||||| | |||||||||||  |||||||  ||||||||||||||| || ||||| ||||| |||||||||||     
T  27763884 gtgtaaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacact 27763785  T
Q  238 gttg 241  Q
    ||||    
T  27763784 gttg 27763781  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 1642769 - 1642657
Alignment:
Q  138 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 237  Q
    ||||||||| ||||||||| ||  |||||||| |  |||||||||| ||| ||||  |||| ||||||||||  | ||||| |||||||||||||||||     
T  1642769 gtgtaaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacg 1642670  T
Q  238 gttgcatgttcaa 250  Q
    | |||||||||||    
T  1642669 gctgcatgttcaa 1642657  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 22288373 - 22288273
Alignment:
Q  163 caactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcga 262  Q
    ||||||||| ||||||| |||| || ||||    |||||||||||||||||  ||| ||||| ||||||||||  |||||||||||||  ||||||||||    
T  22288373 caactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatgttcaaggctgaattcga 22288274  T
Q  263 a 263  Q
    |    
T  22288273 a 22288273  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 22288625 - 22288553
Alignment:
Q  197 actcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatctaaa 269  Q
    ||||||||| |||||||  |||  |||| ||||||| ||| |||||||||||||| ||||||||||| |||||    
T  22288625 actcaaatgtacgacaagttctcactaagagttttagcactgttgcatgttcaaagctgaattcgaacctaaa 22288553  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 39950363 - 39950253
Alignment:
Q  150 tatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttca 249  Q
    ||||||| |||||||||||| | ||||||||| |  |||||||  |||  |||||| |||||| | ||| ||||||| ||||||| | | ||||||| ||    
T  39950363 tatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgtcca 39950264  T
Q  250 aaactgaattc 260  Q
    |||||| ||||    
T  39950263 aaactggattc 39950253  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 38331290 - 38331178
Alignment:
Q  139 tgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccg 238  Q
    |||||||| | ||||||| || ||||||||| | ||||||||||| || |||||  |||| ||||||| || ||| ||||  |||| ||||||||| | |    
T  38331290 tgtaaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctg 38331191  T
Q  239 ttgcatgttcaaa 251  Q
     |||||| |||||    
T  38331190 ctgcatgctcaaa 38331178  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 48204289 - 48204385
Alignment:
Q  138 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 234  Q
    ||||||||| | ||||||| ||  |||||||| |  ||||||||||| |||||||  | || |||||||||||||| |||| |||||  ||||||||    
T  48204289 gtgtaaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaac 48204385  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 10592090 - 10591983
Alignment:
Q  138 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 237  Q
    ||||||||| | ||||||| ||  |||||||||| |||||||||||  |||||||  |||||||||||| || || ||||| ||||| |||||||||||     
T  10592090 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacact 10591991  T
Q  238 gttgcatg 245  Q
    | ||||||    
T  10591990 gctgcatg 10591983  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 29553677 - 29553606
Alignment:
Q  163 caactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 234  Q
    ||||||||| |||||||| ||| ||||||   |||| ||||||||||||||||||| ||||| |||||||||    
T  29553677 caactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaac 29553606  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 5051760 - 5051657
Alignment:
Q  131 ttttctagtgtaaatctgatatcctctgcatgcaact-gcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagtt 229  Q
    |||| ||||||||||| |  |||||||||| |||||| ||||  ||||||| ||  |||||||   ||||||||||||||||||| ||| ||||||| ||    
T  5051760 ttttttagtgtaaatcgggcatcctctgcacgcaacttgcagaaactaatctctcgagcattgtgagactcaaatggacgacaaagtctccctaaaattt 5051661  T
Q  230 ttaa 233  Q
    ||||    
T  5051660 ttaa 5051657  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 45779003 - 45778902
Alignment:
Q  162 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcg 261  Q
    |||||||| | |||||||||||  || ||||   |||||||| |||||||||||  | |||||||| ||||||||||||| |||| ||| ||||||||||    
T  45779003 gcaactgcggagactaatccctcgagtattgtgagactcaaacggacgacaaacaatccctaaaagctttaacaccgttgtatgtccaagactgaattcg 45778904  T
Q  262 aa 263  Q
    ||    
T  45778903 aa 45778902  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 28099382 - 28099299
Alignment:
Q  162 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatg 245  Q
    |||||||| | |||||||||||  ||||||   | |||||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  28099382 gcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatg 28099299  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 17457073 - 17457140
Alignment:
Q  167 tgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 234  Q
    ||||| ||||||||| ||||||||||  || || |||| | |||||| ||||||||||||||||||||    
T  17457073 tgcagagactaatcctttaagcattgtgggtcttaaataggcgacaagctcttcctaaaagttttaac 17457140  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 12411276 - 12411215
Alignment:
Q  173 gactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 234  Q
    ||||||||||| ||||||||  ||||| |||||| || || ||||||||||| |||||||||    
T  12411276 gactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaac 12411215  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 2744072 - 2743989
Alignment:
Q  162 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatg 245  Q
    |||||||| | |||||||||||  |||||||  |||| |||||||||||||  |||| ||||| ||||||||||| | ||||||    
T  2744072 gcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatg 2743989  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 27121805 - 27121886
Alignment:
Q  215 ctcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatctaaatcattggttaaactagaaaaaacccgt 296  Q
    |||||||||||||||||||||| |||||||| | ||| ||| ||||||| | | | | |||||||| |||||| | ||||||    
T  27121805 ctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgt 27121886  T

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