View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4061_low_18 (Length: 382)

Name: NF4061_low_18
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4061_low_18
NF4061_low_18
[»] chr4 (1 HSPs)
chr4 (10-382)||(43928051-43928427)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 43928427 - 43928051
Alignment:
Q  10 gaggatcacagaccgttgcaggttgcgcgcagttagttggtttgtgaagaagttccattccaactctgcaaaaccaaaaatccttttannnnnnnatata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  43928427 gaggatcacagaccgttgcaggttgcgcgcagttagttggtttgtgaagaagttccattccaactctgcaaaaccaaaaatccttttattttt--atata 43928330  T
Q  110 acttttctttaatatgttttgatttcaatccttgttcttgttttacatttccttctggtttttatctccgcttcatatctctctcttggtttggtgctca 209  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43928329 acttttctttaatatgttttgatttcaatccttcttcttgttttacatttccttctggtttttatctccgcttcatatttctctcttggtttggtgctca 43928230  T
Q  210 ttgttgttaaggtatttcttctcatatatttattttctttcaatccattgtcttctattcaatgcatccaatcccaatatcagaaaatggcaatttggaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43928229 ttgttgttaaggtatttcttctcatatatttattttctttcaatccattgtcttctattc-atgcatccaatcccaatatcagaaaatggcaatttggaa 43928131  T
Q  310 catatatttaatgatttgctta-------tgtatttatttttgttacatcattggttatgcatgtgttttttaattaatc 382  Q
    ||||||||||||||||| ||||       | ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43928130 catatatttaatgattttcttatctttcgtctatttatttttgttaaatcattggttatgcatgtgttttttaattaatc 43928051  T

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