View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4061_low_2 (Length: 694)
Name: NF4061_low_2
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 286 - 654
Target Start/End: Complemental strand, 13308010 - 13307642
Alignment:
| Q |
286 |
atttatgtctcacgattcgaactttctttttgtagtgtgcatctgtgctatcagtgtatgggtgttacatgtatagaaaatcaacatccactacgttaaa |
385 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
13308010 |
atttatgtctcacaatttgaactttcttgttgtagtgtgcatctgtgctatcagtgtatgggtgttacatgtatagaaaatccacatccaccaccttaaa |
13307911 |
T |
|
| Q |
386 |
tgataatattgctagaatcgatgcagggcaaggtccaaatgtacctctcttacaccaggatgccacaaacatacagaagaatcaaattgcacccgtttgg |
485 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13307910 |
tgataatattgctagaatagatgcagagcaaggtccaaatgtacctctcttacaccaggatgccacaaacatacagaagaatcaaattgcacctgtttgg |
13307811 |
T |
|
| Q |
486 |
agttacattttccaaattttattccaggtattaacaacaattgaataggaaaatacagacctgggcttattgcatgtcgggaaatttggtcctttgcttt |
585 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13307810 |
agttacatttttcaaattttattccaggtattaacaacaattcaatagaaaaacacattcctgggcttattgcatgtggggaaatttggtcctttgcttt |
13307711 |
T |
|
| Q |
586 |
cccttatatttgtttgtttcatttgaagtttgtgagtgttctatccgtcttctatcttctatttttctt |
654 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13307710 |
cccttatatttgtttgtttctttcaaagtttgtgagtgttctatccgtcttctatcttctatttttctt |
13307642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 13308136 - 13308016
Alignment:
| Q |
94 |
aggtggaccttcactctggttacaatttattttggggtatggctcttgattctccttggaagcattgccttttatcgaaccaatcctattgatatatctt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
13308136 |
aggtggaccttcactctggttacaatttattttggggtatggctcttaattctccttggaaaccttgccttggatcgaaccaatgctattcatatatctt |
13308037 |
T |
|
| Q |
194 |
cttttgcgactttgtgatgtt |
214 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
13308036 |
cttttgtgactttgtgatgtt |
13308016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University