View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4061_low_21 (Length: 336)

Name: NF4061_low_21
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4061_low_21
NF4061_low_21
[»] chr3 (8 HSPs)
chr3 (22-317)||(22434672-22434967)
chr3 (243-306)||(22429844-22429907)
chr3 (243-315)||(22366186-22366258)
chr3 (162-202)||(22429867-22429907)
chr3 (242-306)||(22633716-22633780)
chr3 (243-306)||(22352093-22352156)
chr3 (55-102)||(22429755-22429802)
chr3 (162-202)||(22366209-22366249)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 22434672 - 22434967
Alignment:
Q  22 gtttcatataaggattggaaaaattagcccttttaaaaattacataatgcttgtactttaatgactaagcagtaaatattacttcaannnnnnnnncttt 121  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||    
T  22434672 gtttaatataaggattggaaaaattagcccttttaaaaattacataatgcttgtactttaatgactaagcagtaaatattacttcaatttttttttcttt 22434771  T
Q  122 caaattggttagaaatttaagcataccattttttccactcgaagatccaatgctcttctccttcatcaggaacaatgctctctagtatacgccccgcgct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22434772 caaattggttagaaatttaagcataccattttttccactcgaagatccaatgcacttctccttcatcaggaacaatgctctctagtatacgccccgcgct 22434871  T
Q  222 ctatcaattgttgtaaaaaatatttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctctttacaagtttc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22434872 ctatcaattgttgtaaaaaatatttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctccttacaagtttc 22434967  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 22429844 - 22429907
Alignment:
Q  243 atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct 306  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  22429844 atttctacagagggcacttgcttgaagatccaatgctcttctccttcatcgggaacaatgctct 22429907  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 22366186 - 22366258
Alignment:
Q  243 atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctctttacaagtt 315  Q
    ||||||| | |||||||||||||||||||| |||||| || ||||| ||||||| ||||||||| || |||||    
T  22366186 atttctacaaagggcacttgcttgaagatccaatgctcttttcctttatcaggagcaatgctctgtataagtt 22366258  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 22429867 - 22429907
Alignment:
Q  162 gaagatccaatgctcttctccttcatcaggaacaatgctct 202  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  22429867 gaagatccaatgctcttctccttcatcgggaacaatgctct 22429907  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 22633716 - 22633780
Alignment:
Q  242 tatttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct 306  Q
    |||||||| | |||||||||||||||| ||| |||||| || |||||||| |||| |||||||||    
T  22633716 tatttctacaaagggcacttgcttgaatatccaatgctcttttccttcattaggagcaatgctct 22633780  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 22352093 - 22352156
Alignment:
Q  243 atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct 306  Q
    ||||||| |||||||||||| ||||||||| || | | || ||||||||||||| |||||||||    
T  22352093 atttctacagagggcacttggttgaagatccaacgttcttttccttcatcaggagcaatgctct 22352156  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 22429755 - 22429802
Alignment:
Q  55 taaaaattacataatgcttgtactttaatgactaagcagtaaatatta 102  Q
    |||||||||||||||||||||| ||| |||||||| || |||||||||    
T  22429755 taaaaattacataatgcttgtattttcatgactaaacaataaatatta 22429802  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 22366209 - 22366249
Alignment:
Q  162 gaagatccaatgctcttctccttcatcaggaacaatgctct 202  Q
    ||||||||||||||||| ||||| ||||||| |||||||||    
T  22366209 gaagatccaatgctcttttcctttatcaggagcaatgctct 22366249  T

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