View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4061_low_22 (Length: 324)
Name: NF4061_low_22
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 48606895 - 48606598
Alignment:
| Q |
18 |
gattttgccaccggcgaatcaatggcgagtttggatactcacatttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48606895 |
gattttgccaccggcgaatcaatggcgagtttggatactcacatttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaag |
48606796 |
T |
|
| Q |
118 |
aatgtttttcaaggtttaagttatcgtcgttcacgttatctttttcatgattctcctagtttttatgtttcacttcaagaaaataatgctattagtttag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48606795 |
aatgtttttcaaggtttaagttatcgtcgttcacgttatctttttcatgattctcctagtttttatgtttcacttcaagaaaataatgctattagtttag |
48606696 |
T |
|
| Q |
218 |
atcaaaaccaacccaacaaaacccatgtttctgttgatgttactttagctgaaaaagttgataaaaacctaaatagatttgatcttgttaagaataat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48606695 |
atcaaaaccaacccaacaaaacccatgtttctgttgatgttactttagctgaaaaagttgataaaaacctaaatagatttgatcttgttaagaataat |
48606598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 315
Target Start/End: Complemental strand, 48612477 - 48612188
Alignment:
| Q |
35 |
atcaatggcgagtttggatactcacatttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgtttttcaaggttt |
134 |
Q |
| |
|
||||||||||| || || ||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
48612477 |
atcaatggcgaattgggttactcactgttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttaagaatgtttttcaaggttt |
48612378 |
T |
|
| Q |
135 |
aagttatcgtcgttcacgttatctttttcatgattctc---ctagtttttatgtttcacttcaagaaaataatgctattagttt---agatcaaaaccaa |
228 |
Q |
| |
|
||| ||||||||||||| ||||||| ||||| ||||| ||| |||| || |||||| |||||| | || ||||||| ||||||||||||| |
|
|
| T |
48612377 |
aaggtatcgtcgttcacattatcttgctcatgtttctcctactacttttaatctttcacatcaagatttgtttcctgttagtttagaagatcaaaaccaa |
48612278 |
T |
|
| Q |
229 |
cccaacaaaacccatgt---ttctgttgatgttactttagctgaaaaagttgataaaaacctaaatagatttgatcttgttaagaataat |
315 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
48612277 |
cccaacaatacccatgtttcttctgttaatgttactttagctcaaaaacttgataaaaacctagaaagttttgatcttgttaagaataat |
48612188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 7447240 - 7447176
Alignment:
| Q |
62 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
126 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||||| || | ||||||||||| |
|
|
| T |
7447240 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttgagaatgttttt |
7447176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 7959304 - 7959240
Alignment:
| Q |
62 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
126 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||||| || | ||||| ||||| |
|
|
| T |
7959304 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttgagaattttttt |
7959240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 20987069 - 20987005
Alignment:
| Q |
62 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
126 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||||| | | ||||||||||| |
|
|
| T |
20987069 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactcttgagaatgttttt |
20987005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 3802313 - 3802377
Alignment:
| Q |
62 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
126 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||| |||||||||||| || | ||||| ||||| |
|
|
| T |
3802313 |
ttttggttttatttggaatgttcattgtttggagcattgatggatgcactgttgagaattttttt |
3802377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University