View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4061_low_23 (Length: 313)

Name: NF4061_low_23
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4061_low_23
NF4061_low_23
[»] chr8 (2 HSPs)
chr8 (1-150)||(3791283-3791432)
chr8 (148-304)||(3792824-3792981)
[»] chr7 (2 HSPs)
chr7 (1-150)||(12811720-12811869)
chr7 (148-304)||(12813261-12813418)
[»] chr4 (9 HSPs)
chr4 (1-150)||(1654522-1654671)
chr4 (1-150)||(37152178-37152327)
chr4 (1-150)||(45222496-45222645)
chr4 (1-150)||(9129531-9129680)
chr4 (148-304)||(9131073-9131229)
chr4 (148-304)||(37150628-37150784)
chr4 (148-304)||(45220948-45221104)
chr4 (148-304)||(1652974-1653130)
chr4 (260-302)||(26650793-26650835)
[»] chr1 (4 HSPs)
chr1 (1-150)||(23780450-23780599)
chr1 (1-150)||(52636344-52636493)
chr1 (148-304)||(23778902-23779058)
chr1 (148-304)||(52637885-52638041)
[»] chr2 (2 HSPs)
chr2 (151-205)||(32378403-32378457)
chr2 (249-302)||(32378504-32378557)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 3791283 - 3791432
Alignment:
Q  1 tccacaagtcattcactccataccttgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3791283 tccacaagtcattcactccataccctgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 3791382  T
Q  101 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3791383 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 3791432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 3792824 - 3792981
Alignment:
Q  148 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatg-nnnnnnnnnnctcca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||           |||||    
T  3792824 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaacaaacattcacaaaatgaaaaaaaaaaactcca 3792923  T
Q  247 tgtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3792924 tgtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 3792981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 12811720 - 12811869
Alignment:
Q  1 tccacaagtcattcactccataccttgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12811720 tccacaagtcattcactccataccctgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 12811819  T
Q  101 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12811820 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 12811869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 12813261 - 12813418
Alignment:
Q  148 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatg-nnnnnnnnnnctcca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||           |||||    
T  12813261 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaacaaacattcacaaaatgaaaaaaaaaaactcca 12813360  T
Q  247 tgtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12813361 tgtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 12813418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 1654671 - 1654522
Alignment:
Q  1 tccacaagtcattcactccataccttgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1654671 tccacaagtcattcactccataccctgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 1654572  T
Q  101 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1654571 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 1654522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 37152327 - 37152178
Alignment:
Q  1 tccacaagtcattcactccataccttgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37152327 tccacaagtcattcactccataccctgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 37152228  T
Q  101 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37152227 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 37152178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45222645 - 45222496
Alignment:
Q  1 tccacaagtcattcactccataccttgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45222645 tccacaagtcattcactccataccctgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 45222546  T
Q  101 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45222545 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 45222496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 9129531 - 9129680
Alignment:
Q  1 tccacaagtcattcactccataccttgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9129531 tccacaagtcattcactccataccctgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 9129630  T
Q  101 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 150  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9129631 atgacatctttcttcatatgaggagtcttatatttattggaccctttaac 9129680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 9131073 - 9131229
Alignment:
Q  148 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  9131073 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 9131172  T
Q  248 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9131173 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 9131229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 37150784 - 37150628
Alignment:
Q  148 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  37150784 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 37150685  T
Q  248 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37150684 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 37150628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 45221104 - 45220948
Alignment:
Q  148 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  45221104 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 45221005  T
Q  248 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45221004 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 45220948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 1653130 - 1652974
Alignment:
Q  148 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||          ||||||    
T  1653130 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaacaaacattcacaaaatgaaaaaaaaaactccat 1653031  T
Q  248 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653030 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 1652974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 26650835 - 26650793
Alignment:
Q  260 tcttcgatgttattgtaaaaaagttcagctacatcttcttcat 302  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  26650835 tcttcaatgttattgtgaaaaagttcagctacatcttcttcat 26650793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 23780599 - 23780450
Alignment:
Q  1 tccacaagtcattcactccataccttgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23780599 tccacaagtcattcactccataccctgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 23780500  T
Q  101 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23780499 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 23780450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 52636344 - 52636493
Alignment:
Q  1 tccacaagtcattcactccataccttgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52636344 tccacaagtcattcactccataccctgcaagagttcactaatttcagcaaccaattcttgatcgcaatttagtgtagtgggtagtgtagcttgtctaagc 52636443  T
Q  101 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52636444 atgacatctttcttcatatgaggagtcttgtatttattggaccctttaac 52636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 23779058 - 23778902
Alignment:
Q  148 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  23779058 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 23778959  T
Q  248 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23778958 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 23778902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 52637885 - 52638041
Alignment:
Q  148 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactcatataaataaacattcacaaaatgnnnnnnnnnnctccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||    
T  52637885 aacgtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaactaatataaataaacattcacaaaatgaaaaaaaaaactccat 52637984  T
Q  248 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52637985 gtacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcatct 52638041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 32378403 - 32378457
Alignment:
Q  151 gtggagaatattgagtgcaaaaagtggcacaatataataaagacaagtgcaaaac 205  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  32378403 gtggagtataatgagtgcaaaaggtggcacaatataataaagacaaatgcaaaac 32378457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 32378504 - 32378557
Alignment:
Q  249 tacctatatcttcttcgatgttattgtaaaaaagttcagctacatcttcttcat 302  Q
    |||| |||||||| || |||||||||| |||||||| ||| |||||||||||||    
T  32378504 tacccatatcttcctcaatgttattgtgaaaaagttaagcgacatcttcttcat 32378557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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