View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_25 (Length: 281)
Name: NF4061_low_25
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 30836775 - 30837008
Alignment:
| Q |
20 |
atataacaagcaaaataagatatggcctcttttctcctaattaaacctatttatagaatgcaaaccgcatgaaatttgtttggatcgatcaagtcccacc |
119 |
Q |
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| T |
30836775 |
atataacaagcaaaataagatatggcctcttttctcctaattaaacctatttatagaatgcaaaccgcatgaaatttgtttggatcgatcaagtcccacc |
30836874 |
T |
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| Q |
120 |
gcatcaattgttttaaacatagaaaatattttgtttgaatcttgatcgatttgacatatgtaatatggaggactagaggtcatcaatcatcctctcccta |
219 |
Q |
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| T |
30836875 |
gcatcaattgtttt------------------gtttgaatcttgatagatttgacatatgtaatatggaggactagaggtcatcaatcatcctctcccta |
30836956 |
T |
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| Q |
220 |
cttcgaattttgtctgttttaacattttgtttccattcattttctccctatg |
271 |
Q |
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| T |
30836957 |
cttcgaattttgtctgttttaacattttgtttccattcattttctccctatg |
30837008 |
T |
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