View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_26 (Length: 267)
Name: NF4061_low_26
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 34754992 - 34755245
Alignment:
| Q |
8 |
gagaagaaatcctgcatacacaaagcgttctgaatgtaagagcattgcaagagatgtaaaattgcatgtttacttcatagtacatacacataacttacca |
107 |
Q |
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| T |
34754992 |
gagaagaaatcctgcatacacaaagcgttctgaatgtaagagcattgcaagagatgtaaaattgcatgtttacttcatagtacatacacataacttacca |
34755091 |
T |
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| Q |
108 |
aaccatattcaaaagtgccatagtggtataaagttaaaagtcttagttcaataacatctcctcaataaatacttaacactattgattgatgaaatttaaa |
207 |
Q |
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| T |
34755092 |
aaccatattcaaaagtgccatagtggtataaagttaaaagtcttagttcaataacatctcctcaataaatacttaacactattgatcgatgaaatttaaa |
34755191 |
T |
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| Q |
208 |
ttaattagcatataattagaagataagaaacaaagacaattagaataaacttac |
261 |
Q |
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| T |
34755192 |
ttaattagcatataattagaagataagaaacaaagacaattagaataaacttac |
34755245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 34780977 - 34780891
Alignment:
| Q |
175 |
aatacttaacactattgattgatgaaatttaaattaattagcatataattagaagataagaaacaaagacaattagaataaacttac |
261 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||| || || ||| ||||||||||||||||||||| |||| |||||||| |
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| T |
34780977 |
aatacttaacaccgttgattaatggaatttaaattaattagaatgtatttataagataagaaacaaagacaatcagaagaaacttac |
34780891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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