View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4061_low_3 (Length: 593)

Name: NF4061_low_3
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4061_low_3
NF4061_low_3
[»] chr5 (13 HSPs)
chr5 (18-593)||(39675752-39676327)
chr5 (18-279)||(10873542-10873803)
chr5 (18-279)||(10878613-10878874)
chr5 (18-279)||(10883684-10883945)
chr5 (18-279)||(10866502-10866763)
chr5 (18-279)||(10887602-10887863)
chr5 (346-554)||(10866218-10866426)
chr5 (346-554)||(10873879-10874087)
chr5 (346-554)||(10878950-10879158)
chr5 (346-554)||(10884021-10884229)
chr5 (340-565)||(10887942-10888167)
chr5 (18-263)||(10046138-10046383)
chr5 (363-563)||(10045775-10045975)
[»] chr8 (1 HSPs)
chr8 (25-125)||(30709588-30709688)


Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Complemental strand, 39676327 - 39675752
Alignment:
Q  18 caacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676327 caacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggt 39676228  T
Q  118 aaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676227 aaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatg 39676128  T
Q  218 gaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttggacaaggatttcctccggtagatttggcatgactttggt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676127 gaattgatccagacaccactgcaccaacaacctcctcatcttccatggacaaaactttttggacaaggatttcctccggtagatttggcatgactttggt 39676028  T
Q  318 ggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39676027 ggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatg 39675928  T
Q  418 agggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtaaaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacgg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675927 agggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacgg 39675828  T
Q  518 agaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcctttg 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39675827 agaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttg 39675752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 10873542 - 10873803
Alignment:
Q  18 caacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||    
T  10873542 caacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggt 10873641  T
Q  118 aaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatg 217  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| |||||||||||||||||||    
T  10873642 aaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatg 10873741  T
Q  218 gaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 279  Q
    |||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10873742 gaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 10878613 - 10878874
Alignment:
Q  18 caacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||    
T  10878613 caacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggt 10878712  T
Q  118 aaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatg 217  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| |||||||||||||||||||    
T  10878713 aaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatg 10878812  T
Q  218 gaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 279  Q
    |||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10878813 gaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10878874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 10883684 - 10883945
Alignment:
Q  18 caacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||    
T  10883684 caacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggt 10883783  T
Q  118 aaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatg 217  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| |||||||||||||||||||    
T  10883784 aaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatg 10883883  T
Q  218 gaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 279  Q
    |||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10883884 gaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10883945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 10866763 - 10866502
Alignment:
Q  18 caacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  || |||||||||||||| |||    
T  10866763 caacaaaggaccggcaacacccaccggaatctgaacaaaccctatcggcatctcgcaacactgtcctaatatagaattgtagtcaaaaccttccatcggt 10866664  T
Q  118 aaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatg 217  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| |||||||||||||||||||    
T  10866663 aaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatg 10866564  T
Q  218 gaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 279  Q
    |||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10866563 gaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10866502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 10887602 - 10887863
Alignment:
Q  18 caacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggt 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||| ||| |||    
T  10887602 caacaaaggaccggcaacacccaccggaatttgaacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaacctttcatcggt 10887701  T
Q  118 aaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatg 217  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||   || ||||| ||||||||||| |||||||| ||||| |||||||| |    
T  10887702 aaaccttcaagtgaccttccggtaaccctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagcttcgactcaagggagtaagaag 10887801  T
Q  218 gaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 279  Q
    |||||||||| || ||||||||||| |||||||| || |||||||| |||| ||||||||||    
T  10887802 gaattgatcccgataccactgcaccgacaacctcttcgtcttccatggacataactttttgg 10887863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 346 - 554
Target Start/End: Complemental strand, 10866426 - 10866218
Alignment:
Q  346 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 445  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10866426 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10866327  T
Q  446 ttgtgaggacatggagaggtgtaaaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 545  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10866326 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10866227  T
Q  546 tgttaagta 554  Q
    |||||||||    
T  10866226 tgttaagta 10866218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 346 - 554
Target Start/End: Original strand, 10873879 - 10874087
Alignment:
Q  346 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 445  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10873879 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10873978  T
Q  446 ttgtgaggacatggagaggtgtaaaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 545  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10873979 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10874078  T
Q  546 tgttaagta 554  Q
    |||||||||    
T  10874079 tgttaagta 10874087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 346 - 554
Target Start/End: Original strand, 10878950 - 10879158
Alignment:
Q  346 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 445  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10878950 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10879049  T
Q  446 ttgtgaggacatggagaggtgtaaaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 545  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10879050 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10879149  T
Q  546 tgttaagta 554  Q
    |||||||||    
T  10879150 tgttaagta 10879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 346 - 554
Target Start/End: Original strand, 10884021 - 10884229
Alignment:
Q  346 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 445  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10884021 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10884120  T
Q  446 ttgtgaggacatggagaggtgtaaaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 545  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10884121 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10884220  T
Q  546 tgttaagta 554  Q
    |||||||||    
T  10884221 tgttaagta 10884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 340 - 565
Target Start/End: Original strand, 10887942 - 10888167
Alignment:
Q  340 acttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatct 439  Q
    ||||| ||||| || ||||||||||||| ||||||||||  ||||||||||||  |||||||||  | | |||| ||||||||||||| ||||| |||||    
T  10887942 acttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatct 10888041  T
Q  440 cggagattgtgaggacatggagaggtgtaaaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaa 539  Q
    | |||| ||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||     
T  10888042 cagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaac 10888141  T
Q  540 agtgtttgttaagtaaagtgaagaag 565  Q
    || ||||||||| || ||||||||||    
T  10888142 agcgtttgttaaatacagtgaagaag 10888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 10046383 - 10046138
Alignment:
Q  18 caacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggt 117  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||    
T  10046383 caacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttccattggt 10046284  T
Q  118 aaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatg 217  Q
    |||||    |||||| |||| |||||||||||||| |||||||| |  ||| | || ||||||  ||||||||| || || |||||||||||||| || |    
T  10046283 aaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgagtatgacg 10046184  T
Q  218 gaattgatccagacaccactgcaccaacaacctcctcatcttccat 263  Q
    ||||||  || |  ||||| ||||  |||||||| |||||||||||    
T  10046183 gaattgtaccggttaccaccgcacggacaacctcgtcatcttccat 10046138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 363 - 563
Target Start/End: Complemental strand, 10045975 - 10045775
Alignment:
Q  363 atgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga 462  Q
    |||||| |||||| ||| ||||||||||||| ||||||| |||| | |||| ||||||||||| | | |   |||||| ||||||||||| ||||| |||    
T  10045975 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 10045876  T
Q  463 ggtgtaaaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaag 562  Q
    |||||  ||||||||||||| |||||||||| || ||||||||| || |||||||||||||| |||||||||||||  | |||||||||||| |||||||    
T  10045875 ggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaag 10045776  T
Q  563 a 563  Q
    |    
T  10045775 a 10045775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 30709588 - 30709688
Alignment:
Q  25 ggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaacctt 124  Q
    ||||| |||||||| |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||||||||  ||||||||||    
T  30709588 ggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcacaacactgtcccaatatcgaatcgtaatcaaaaccttccaacggtaaacctt 30709687  T
Q  125 c 125  Q
    |    
T  30709688 c 30709688  T

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