View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_30 (Length: 238)
Name: NF4061_low_30
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 28192222 - 28192094
Alignment:
| Q |
110 |
attaccctacccccaaatgtaaagttccttggtaagctcatatcatttgagcactatagtgagtagtgattcaaacatgtttgaattaatataggaagac |
209 |
Q |
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| T |
28192222 |
attaccctacccccaaatgtaaagttccttggtaagctcatatcatttgagcactatagtgagtagtgattcaaacatgtttgaattaatataggaagac |
28192123 |
T |
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| Q |
210 |
atttcggggtcaataataagatacacaac |
238 |
Q |
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| T |
28192122 |
atttcggggtcaataataagatacacaac |
28192094 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 28192380 - 28192285
Alignment:
| Q |
18 |
gaatatatattttgaatattttcgaacca-----agactaaaaccatatcttacactactttaccattgagtcaatcctctccacatttaatatatgatt |
112 |
Q |
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| T |
28192380 |
gaatatatattttgagcattttcgaaccaacttgagactaaaatcatatct-----tactttaccattgagtcaatcctctccacatttaatatatgatt |
28192286 |
T |
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