View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_4 (Length: 583)
Name: NF4061_low_4
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 138 - 567
Target Start/End: Complemental strand, 35561829 - 35561400
Alignment:
| Q |
138 |
tgatggtgaaaaatatttggggactaaaacttggtgaaattttttagaggaactaaaaaacaaagtttgaaaattttatagagagcaaaacnnnnnnnnn |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35561829 |
tgatggtgaaaaatatttggggactaaaacttggtgaaattttttagaggaactaaaaaataaagtttgaaaattttatagagagcaaaacttttttttt |
35561730 |
T |
|
| Q |
238 |
-caagataagggggcaaaacttatttaaccnnnnnnnnnttggcatacataatgtagcaactattcactcaaaattgatatactaatgaatgtttagatt |
336 |
Q |
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| T |
35561729 |
tcaagataagggagcaaaacttatttaaccaaaaaaaaat-ggcatacataatgtagcaactattcactcaaaattgatatactaatgaatgtttagatt |
35561631 |
T |
|
| Q |
337 |
cagtatgatcagtttgaaagaatcacgacgagctaccgtaaattttcaaatgctacactttgtagtttcaagcaaatcgtagtattatgtactataattt |
436 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35561630 |
cagtatgatcagtttgaaagaatcacgacgagctatcgtaatttttcaaatgctacactttgtagtttcaagcaaatcgtagtattatgtactataattt |
35561531 |
T |
|
| Q |
437 |
catcgaactaaccataattctagacacataaaattaccttcaacatgcttaaataatgtttattaaattttaattttaacttagaattcattctagtttg |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
35561530 |
tatcgaactaaccataattctagacacataaaattaccttcaacatgcttaaataatgtttattaaaatttaattttaacttagaattgattctagtttg |
35561431 |
T |
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| Q |
537 |
aagttaagatttgcagtttctaatttcaaac |
567 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
35561430 |
aagttaagatttgtagtttctaatttcaaac |
35561400 |
T |
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