View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_5 (Length: 544)
Name: NF4061_low_5
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_5 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 21716013 - 21716529
Alignment:
| Q |
18 |
ctaacaatgtaaattgtggaattggaccttttggggcattttcttttttcttgaaagaagagaataagacattgagaaatggttgttttgatggtaattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716013 |
ctaacaatgtaaattgtggaattggaccttttggggcattttcttttttcttgaaagaagagaataagacattgagaaatggttgttttgatggtaattt |
21716112 |
T |
|
| Q |
118 |
gagtggaagagtgagagtgagggctgaagatgttatggaagctgtgaaattggctgctaacaaccaaccatttgaagttgtttactatccaagagctagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716113 |
gagtggaagagtgagagtgagggctgaagatgttatggaagctgtgaaattggctgctaacaaccaaccatttgaagttgtttactatccaagagctagc |
21716212 |
T |
|
| Q |
218 |
actcctgagttctgtgttaaggcttcagctgtgaaggctgctatgaggattcaatggtgttctgggatgaggttcaagatgccctttgaaactgaagact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716213 |
actcctgagttctgtgttaaggcttcagctgtgaaggctgctatgaggattcaatggtgttctgggatgaggttcaagatgccctttgaaactgaagact |
21716312 |
T |
|
| Q |
318 |
cttctaggattagttggtttatgggaacaatcgcttccgttcaggttgttgatcctattcgttggcctaactctccttggcgccttcttcaggtattgtt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716313 |
cttctaggattagttggtttatgggaacaatcgcttctgttcaggttgttgatcctattcgttggcctaactctccttggcgccttcttcaggtattgtt |
21716412 |
T |
|
| Q |
418 |
ttttagttatgatttggagtaatatgttgcacacatctttacataagggactcaatttttatgcttcttcggatatctatcttgctttgttattattctg |
517 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716413 |
ttttagttaggatttggagtaatatgttgcacacatctttacataagggactcaatttttatgcttcttcggatatctatcttgctttgttattattctg |
21716512 |
T |
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| Q |
518 |
ttttatggtcatctctg |
534 |
Q |
| |
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||||||||||||||||| |
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| T |
21716513 |
ttttatggtcatctctg |
21716529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 51743099 - 51743155
Alignment:
| Q |
356 |
gttcaggttgttgatcctattcgttggcctaactctccttggcgccttcttcaggta |
412 |
Q |
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||||||||||||||||||||||| |||||||| || ||||| | |||||||||||| |
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| T |
51743099 |
gttcaggttgttgatcctattcggtggcctaattcctcttggagacttcttcaggta |
51743155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 51742165 - 51742244
Alignment:
| Q |
254 |
gctgctatgaggattcaatggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtt |
336 |
Q |
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||||||||||| ||||||||||||||||| ||| ||| |||||||| || ||||||| || |||||||| ||||||||||| |
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| T |
51742165 |
gctgctatgagaattcaatggtgttctggtgtga-gtttaagatgccatt--aaactgaggattcttctagtattagttggtt |
51742244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 120 - 412
Target Start/End: Complemental strand, 40352322 - 40352030
Alignment:
| Q |
120 |
gtggaagagtgagagtgagggctgaagatgttatggaagctgtgaaattggctgctaacaaccaaccatttgaagttgtttactatccaagagctagcac |
219 |
Q |
| |
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|||||||||||| |||||| | |||| || | ||||||| ||| | | ||||||| || ||| ||||||| || ||||| ||||| ||||| || || |
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| T |
40352322 |
gtggaagagtgaaagtgagtggtgaatcagtgaaggaagctatgagacttgctgctagtaatcaaacatttgaggtagtttattatcctagagcaagtac |
40352223 |
T |
|
| Q |
220 |
tcctgagttctgtgttaaggcttcagctgtgaaggctgctatgaggattcaatggtgttctgggatgaggttcaagatgccctttgaaactgaagactct |
319 |
Q |
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||||||||| ||| ||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| |
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| T |
40352222 |
tcctgagttttgtattaagacttcagctgttaaagctgctatgagaattcaatggtgttctgggatgaggtttaagatgccattcgaaaccgaagattct |
40352123 |
T |
|
| Q |
320 |
tctaggattagttggtttatgggaacaatcgcttccgttcaggttgttgatcctattcgttggcctaactctccttggcgccttcttcaggta |
412 |
Q |
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||||||||||||||||| |||||||| || |||| ||||| |||||||||||||||||||||||||| || |||||| | |||||||||||| |
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| T |
40352122 |
tctaggattagttggttcatgggaactatttcttctgttcaagttgttgatcctattcgttggcctaattccccttggagacttcttcaggta |
40352030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 188 - 412
Target Start/End: Original strand, 42730653 - 42730877
Alignment:
| Q |
188 |
tttgaagttgtttactatccaagagctagcactcctgagttctgtgttaaggcttcagctgtgaaggctgctatgaggattcaatggtgttctgggatga |
287 |
Q |
| |
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||||| ||||| || |||||||||||||| |||||||| || |||||||||| ||| | || || |||| ||| ||||||||||||||||| |||| |
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| T |
42730653 |
tttgaggttgtgtattatccaagagctagtactcctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgttctggtatga |
42730752 |
T |
|
| Q |
288 |
ggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttccgttcaggttgttgatcctattcgttggcctaa |
387 |
Q |
| |
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| ||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||| ||||| ||| ||||| |||||||||||| | |
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| T |
42730753 |
gattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttcatgttcaagatccaattcgttggcctga |
42730852 |
T |
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| Q |
388 |
ctctccttggcgccttcttcaggta |
412 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
42730853 |
ttctccttggcgccttcttcaggta |
42730877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 28347337 - 28347416
Alignment:
| Q |
265 |
gattcaatggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaa |
344 |
Q |
| |
|
||||| |||||||||||| || || ||||||||| |||||||||| || || || ||| | || |||||||||||||||| |
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| T |
28347337 |
gattcgatggtgttctggaataagattcaagatggcctttgaaaccgaggattcgtctcgaataagttggtttatgggaa |
28347416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 96356 - 96429
Alignment:
| Q |
272 |
tggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaac |
345 |
Q |
| |
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|||||| |||| |||||||||||||||||| ||||||| || ||||| || ||||| ||||||||||| ||||| |
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| T |
96356 |
tggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaac |
96429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 88348 - 88448
Alignment:
| Q |
272 |
tggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttccgttcaggttgttgatc |
371 |
Q |
| |
|
|||||| |||| ||||||||||||||| || ||||||| || ||||| || ||||| ||||||||||| ||||| | ||||| ||||||| || ||||| |
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| T |
88348 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatc |
88447 |
T |
|
| Q |
372 |
c |
372 |
Q |
| |
|
| |
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|
| T |
88448 |
c |
88448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 40869926 - 40869853
Alignment:
| Q |
272 |
tggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaac |
345 |
Q |
| |
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|||||| |||| |||||||||||||||||| ||||||| || ||||| || ||||| ||||||||||| ||||| |
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| T |
40869926 |
tggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaac |
40869853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 372
Target Start/End: Complemental strand, 40877935 - 40877835
Alignment:
| Q |
272 |
tggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttccgttcaggttgttgatc |
371 |
Q |
| |
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|||||| |||| ||||||||||||||| || ||||||| || ||||| || ||||| ||||||||||| ||||| | ||||| ||||||| || ||||| |
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| T |
40877935 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatc |
40877836 |
T |
|
| Q |
372 |
c |
372 |
Q |
| |
|
| |
|
|
| T |
40877835 |
c |
40877835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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