View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4061_low_6 (Length: 535)

Name: NF4061_low_6
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4061_low_6
NF4061_low_6
[»] chr6 (5 HSPs)
chr6 (9-518)||(31239966-31240480)
chr6 (203-413)||(31230908-31231117)
chr6 (423-510)||(31231179-31231265)
chr6 (8-37)||(24940514-24940543)
chr6 (9-45)||(10855914-10855950)
[»] chr5 (6 HSPs)
chr5 (9-77)||(9538028-9538096)
chr5 (9-61)||(4592953-4593005)
chr5 (9-61)||(9537114-9537166)
chr5 (9-61)||(14891126-14891178)
chr5 (9-77)||(25590506-25590574)
chr5 (9-61)||(32641705-32641757)
[»] chr4 (9 HSPs)
chr4 (9-61)||(39869012-39869064)
chr4 (9-74)||(50694828-50694893)
chr4 (9-61)||(21621915-21621967)
chr4 (9-39)||(56041078-56041108)
chr4 (12-61)||(32244366-32244415)
chr4 (9-61)||(19050330-19050382)
chr4 (9-57)||(20599885-20599933)
chr4 (9-57)||(21623096-21623144)
chr4 (9-61)||(31844934-31844986)
[»] chr3 (5 HSPs)
chr3 (9-77)||(36279028-36279096)
chr3 (9-77)||(36280296-36280364)
chr3 (16-77)||(47118037-47118098)
chr3 (9-61)||(3671130-3671182)
chr3 (9-61)||(36827454-36827506)
[»] chr2 (10 HSPs)
chr2 (9-77)||(7073715-7073783)
chr2 (9-77)||(17466807-17466875)
chr2 (12-77)||(31090240-31090305)
chr2 (9-77)||(17330209-17330277)
chr2 (9-76)||(17466118-17466185)
chr2 (11-66)||(33161854-33161909)
chr2 (12-61)||(7412184-7412233)
chr2 (12-61)||(37607194-37607243)
chr2 (9-61)||(14704098-14704149)
chr2 (9-61)||(31091506-31091558)
[»] chr1 (9 HSPs)
chr1 (9-61)||(22857558-22857610)
chr1 (9-77)||(6613957-6614026)
chr1 (9-58)||(33342511-33342560)
chr1 (9-61)||(22856772-22856824)
chr1 (9-68)||(52439560-52439619)
chr1 (9-57)||(1407736-1407784)
chr1 (9-77)||(6612495-6612563)
chr1 (9-61)||(7945533-7945585)
chr1 (9-61)||(9339738-9339790)
[»] chr8 (7 HSPs)
chr8 (9-77)||(1952949-1953017)
chr8 (9-61)||(28524850-28524902)
chr8 (9-39)||(41122730-41122760)
chr8 (9-58)||(5736937-5736986)
chr8 (9-61)||(5965421-5965473)
chr8 (9-61)||(32898424-32898476)
chr8 (9-73)||(35178784-35178847)
[»] chr7 (11 HSPs)
chr7 (9-77)||(10899052-10899120)
chr7 (9-61)||(13578300-13578351)
chr7 (25-77)||(33607618-33607670)
chr7 (9-61)||(42477472-42477524)
chr7 (12-61)||(34888905-34888954)
chr7 (9-61)||(5930112-5930164)
chr7 (9-77)||(7258351-7258419)
chr7 (9-61)||(7259663-7259715)
chr7 (9-61)||(33060902-33060954)
chr7 (9-57)||(44529124-44529172)
chr7 (9-61)||(45584475-45584527)


Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 9 - 518
Target Start/End: Original strand, 31239966 - 31240480
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagacnnnnnnnatatttaatcttaagttagagact 108  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||||       |||||||||||||||||| |||||    
T  31239966 acatcatcacttaacagaatcatttaacgtctgggacgaaaatgataacggaaatgcagagtcagagactttttttatatttaatcttaagttaaagact 31240065  T
Q  109 tttatgaccacgagatgctgaatcagatactaaataacaatttactcttttctttatata-----gtatagaagaatatgtattactagctactagacat 203  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||     
T  31240066 tttatgactacgagatgctgaatcaggtactaaataacaatttactcttttctttatatagtatagtatagaagaatatgtattactagctactagacaa 31240165  T
Q  204 aatattgtttcatgatcataaatacattaatatcagagtattagctcttccctacgaagtagcaggttgatttccacaacattagtccctgctaccttta 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31240166 aatattgtttcatgatcataaatacattaatatcagagtattagctcttctctacgaagtagcaggttgatttccacaacattagtccctgctaccttta 31240265  T
Q  304 cactaaatctaatttgtttatcttcgatgcttgcacttgcttttatgtacaacccaaaatcaaagcagcttcttttaccattttgactttgacacattat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31240266 cactaaatctaatttgtttatcttcgatgcttgcacttgcttttatgtacaacccaaaatcaaagcagcttcttttaccattttgactttgacacattat 31240365  T
Q  404 ttatgggtaccacttctacgtagctttcctattatatttgcttactataacatttgtaggaatttaatagaataggatttggtgttgtgacaacgtcctg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31240366 ttatgggtaccacttctacgtagctttcctattatatttgcttactataacatttgtaggaatttaatagaataggatttggtgttgtgacaacgtcctg 31240465  T
Q  504 ctgtaatggattttg 518  Q
    |||||||||||||||    
T  31240466 ctgtaatggattttg 31240480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 203 - 413
Target Start/End: Original strand, 31230908 - 31231117
Alignment:
Q  203 taatattgtttcatgatcataaatacattaatatcagagtattagctcttccctacgaagtagcaggttgatttccacaacattagtccctgctaccttt 302  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||| |||| || | ||||||||| ||| ||| |||||| |||||| || |||    
T  31230908 taatattgtttcatgatcataaatacattaatatcggagtattgactcttcactacaaaatggcaggttgaattctacatcattagcccctgccacattt 31231007  T
Q  303 acactaaatctaatttgtttatcttcgatgcttgcacttgcttttatgtacaacccaaaatcaaagcagcttcttttaccattttgactttgacacatta 402  Q
    |||||||  ||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  31231008 acactaatcctaatttctttttcttcaatgcttgcacttgctcttatgtacaacccaaaatcaaagtagcttctttta-cattttgactttgacacatta 31231106  T
Q  403 tttatgggtac 413  Q
    |||||||||||    
T  31231107 tttatgggtac 31231117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 510
Target Start/End: Original strand, 31231179 - 31231265
Alignment:
Q  423 gtagctttcctattatatttgcttactataacatttgtaggaatttaatagaataggatttggtgttgtgacaacgtcctgctgtaat 510  Q
    ||||||| ||||||||||||||||| |||||  |||||||||| ||| | ||||||||||||||||||| ||| |||| || ||||||    
T  31231179 gtagcttacctattatatttgcttattataaagtttgtaggaa-ttattggaataggatttggtgttgtaacagcgtcatgatgtaat 31231265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 24940543 - 24940514
Alignment:
Q  8 gacatcatcacttaacataattatttaacg 37  Q
    ||||||||||||||||||||||||||||||    
T  24940543 gacatcatcacttaacataattatttaacg 24940514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 10855950 - 10855914
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggac 45  Q
    |||| |||||||||||||||||||||||||| |||||    
T  10855950 acatgatcacttaacataattatttaacgtcagggac 10855914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 9538028 - 9538096
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||| ||||||||||||||||||||||| || | ||| ||||||||||||||| | || ||||||||||    
T  9538028 acataatcacttaacataattatttaacatcagagactaaaatgataacggaagtgcacaatcagagac 9538096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 4593005 - 4592953
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||| | || ||||||||| ||||| ||| |||||||||||    
T  4593005 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaa 4592953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 9537166 - 9537114
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||||||||| ||||||||||||||||| | ||| ||| |||||| ||||    
T  9537166 acatcatcacttaccataattatttaacgtcagtgactaaagtgataatggaa 9537114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 14891126 - 14891178
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||| || ||||||||| | ||| ||| |||||||||||    
T  14891126 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaa 14891178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 25590574 - 25590506
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||| |||| ||||||||| | ||  ||| ||||||| ||| | |||||||||||||    
T  25590574 acatcatcacttaacaaaattttttaacgtcagagattaaagtgataacagaagtgcagaatcagagac 25590506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 32641705 - 32641757
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||| || ||||||||| ||||  ||| |||||||||||    
T  32641705 acatcatcacttaacatatttttttaacgtcagggattaaagtgataacggaa 32641757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 39869064 - 39869012
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||||||||||||||||||||||||||| | ||| ||| |||||||||||    
T  39869064 acatcatcacttaacataattatttaacgtcagagactaaagtgataacggaa 39869012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 50694893 - 50694828
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcaga 74  Q
    |||||||||||||||| |||| ||||||||| ||||| |||  |||||||||| | ||||||||||    
T  50694893 acatcatcacttaacagaattttttaacgtcagggactaaagagataacggaagtgcagaatcaga 50694828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 21621967 - 21621915
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||||| |||||||||||||||||| || ||||| ||| |||||||||||    
T  21621967 acatcatcagttaacataattatttaacatcagggactaaagtgataacggaa 21621915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 56041108 - 56041078
Alignment:
Q  9 acatcatcacttaacataattatttaacgtc 39  Q
    |||||||||||||||||||||||||||||||    
T  56041108 acatcatcacttaacataattatttaacgtc 56041078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 32244415 - 32244366
Alignment:
Q  12 tcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||||||||||||   |||| ||| |||||||||||    
T  32244415 tcatcacttaacataattatttaacgttatggaccaaagtgataacggaa 32244366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 19050382 - 19050330
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||| | |||||||||||||| | ||| ||| |||||||||||    
T  19050382 acatcatcacttaatagaattatttaacgtcggagactaaagtgataacggaa 19050330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 20599885 - 20599933
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataac 57  Q
    |||||||||||||||||||||||||||  || ||||| ||| |||||||    
T  20599885 acatcatcacttaacataattatttaatatcggggactaaagtgataac 20599933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 21623096 - 21623144
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataac 57  Q
    ||||||| | ||||||||||||||||||||| ||||| ||| |||||||    
T  21623096 acatcattagttaacataattatttaacgtcggggactaaagtgataac 21623144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 31844934 - 31844986
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||| || ||||||  |  ||||||||||||||||||||    
T  31844934 acatcatcacttaacatatttttttaactgcaaggacgaaaatgataacggaa 31844986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 36279096 - 36279028
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||| | |||| ||||||||| ||||| ||||||||||||||| | |||| ||||||||    
T  36279096 acatcatcacttaaaagaattttttaacgtcagggactaaaatgataacggaagtgcagagtcagagac 36279028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 36280296 - 36280364
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||||| || ||||||||| ||||| ||| ||||||||||| | |||| ||||||||    
T  36280296 acatcatcacttaacatatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagac 36280364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 47118037 - 47118098
Alignment:
Q  16 cacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    ||||||||| |||||||||||||| ||||| ||| |||||||| || | |||| ||||||||    
T  47118037 cacttaacaaaattatttaacgtcagggactaaagtgataacgaaagtgcagagtcagagac 47118098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 3671182 - 3671130
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||||||||||||||||| ||||||| | ||||  ||| |||||||||||    
T  3671182 acatcatcacttaacataattttttaacggcagggattaaagtgataacggaa 3671130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 36827454 - 36827506
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||| ||||||||||| || | ||| ||| |||||||||||    
T  36827454 acatcatcacttaacaaaattatttaacatcagagactaaagtgataacggaa 36827506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 7073783 - 7073715
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||| ||| | |||||||| ||||| ||| ||||||||||| | |||||||||||||    
T  7073783 acatcatcacttaacagaataacttaacgtcagggactaaagtgataacggaagtgcagaatcagagac 7073715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 17466807 - 17466875
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||| |||||||||||||||  ||| ||| ||||||||||| | |||| ||||||||    
T  17466807 acatcatcacttaacagaattatttaacgtcttagactaaagtgataacggaagtgcagagtcagagac 17466875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 31090305 - 31090240
Alignment:
Q  12 tcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    ||||||||||||||| || ||||||||| ||||| ||||| ||||||||| | |||| ||||||||    
T  31090305 tcatcacttaacatatttttttaacgtcagggactaaaatcataacggaagtgcagagtcagagac 31090240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 17330209 - 17330277
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||| ||| | ||||||||  |||| ||| ||||||||||||| |||| ||||||||    
T  17330209 acatcatcacttaacagaataacttaacgtcatggactaaagtgataacggaaatgcagagtcagagac 17330277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 17466185 - 17466118
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagaga 76  Q
    ||||||||||||||||||||| ||| ||||| ||||| ||| ||| ||||||| | |||| |||||||    
T  17466185 acatcatcacttaacataattgtttcacgtcagggactaaagtgaaaacggaagtgcagagtcagaga 17466118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 33161909 - 33161854
Alignment:
Q  11 atcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaataca 66  Q
    |||||||||||||| ||||||||||||||  |||| ||| ||||||||||| ||||    
T  33161909 atcatcacttaacaaaattatttaacgtcaaggactaaagtgataacggaagtaca 33161854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 7412233 - 7412184
Alignment:
Q  12 tcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||||||||| ||  ||||| ||| |||||||||||    
T  7412233 tcatcacttaacataattatttaatgttagggactaaagtgataacggaa 7412184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 37607243 - 37607194
Alignment:
Q  12 tcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||| ||||||||||||| ||||||| ||||| ||| |||||||||||    
T  37607243 tcatcagttaacataattatataacgtcagggactaaagtgataacggaa 37607194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 14704149 - 14704098
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||| || ||||||||| ||||| ||| |||||||||||    
T  14704149 acatcatcacttaacatattt-tttaacgtcagggactaaagtgataacggaa 14704098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 31091506 - 31091558
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||| || ||||||||| | ||| ||| |||||||||||    
T  31091506 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaa 31091558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 22857558 - 22857610
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||||||||||||||||  |||| ||| |||||||||||    
T  22857558 acatcatcacttaacataattatttaacgtcatggactaaagtgataacggaa 22857610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 6613957 - 6614026
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctg-ggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||| |||||||||||||| | |||| ||||||||||| ||| | |||| ||||||||    
T  6613957 acatcatcacttaacaaaattatttaacgtcggaggactaaaatgataactgaagtgcagagtcagagac 6614026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 33342560 - 33342511
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacg 58  Q
    ||||||||||||||||||||||||||||||| | ||| ||| ||||||||    
T  33342560 acatcatcacttaacataattatttaacgtcagagactaaagtgataacg 33342511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 22856824 - 22856772
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||| |||||||||||||||||||||||||| | ||| ||| |||||||||||    
T  22856824 acataatcacttaacataattatttaacgtcggagactaaagtgataacggaa 22856772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 52439619 - 52439560
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacaga 68  Q
    |||||||||||||||| | || ||||||||| ||||| ||| ||||||||||||| ||||    
T  52439619 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaaatgcaga 52439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 1407784 - 1407736
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataac 57  Q
    ||||||||| |||||| |||||||||||||| ||||| ||| |||||||    
T  1407784 acatcatcagttaacaaaattatttaacgtcagggactaaagtgataac 1407736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 6612563 - 6612495
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||| ||||||||||| |||||||||||||| ||||  ||| |||||| |||| | |||| ||||||||    
T  6612563 acataatcacttaacaaaattatttaacgtcagggattaaagtgataatggaagtgcagagtcagagac 6612495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 7945533 - 7945585
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||||||||| |||| || ||||||||| ||||| ||| |||||||||||    
T  7945533 acatcatcacttagcatatttttttaacgtcagggactaaagtgataacggaa 7945585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 9339790 - 9339738
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||| | || ||||||||| ||||| ||| |||||||||||    
T  9339790 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaa 9339738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 1952949 - 1953017
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||| | |||||||||||| | ||| ||| ||||||||||| |||||| ||| ||||    
T  1952949 acatcatcacttaacagatttatttaacgtcagagactaaagtgataacggaagtacagagtcatagac 1953017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 28524902 - 28524850
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||||| |||||| |||||||||||||| | ||| |||||||||||||||    
T  28524902 acatcatcagttaacaaaattatttaacgtcagagactaaaatgataacggaa 28524850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 41122730 - 41122760
Alignment:
Q  9 acatcatcacttaacataattatttaacgtc 39  Q
    |||||||||||||||||||||||||||||||    
T  41122730 acatcatcacttaacataattatttaacgtc 41122760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 5736986 - 5736937
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacg 58  Q
    |||||||||||||||| |||||||||||||  ||||| ||| ||||||||    
T  5736986 acatcatcacttaacaaaattatttaacgtgagggactaaagtgataacg 5736937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 5965421 - 5965473
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||| |||||||||||| |||||||||| | ||| ||| |||||||||||    
T  5965421 acatcattacttaacataatcatttaacgtcagagactaaagtgataacggaa 5965473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 32898424 - 32898476
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||| | || ||||||||| ||||| ||| |||||||||||    
T  32898424 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaa 32898476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 35178784 - 35178847
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcag 73  Q
    |||||||||||||||| | || ||||||||| ||||| ||| ||||||||||| | |||||||||    
T  35178784 acatcatcacttaacagattt-tttaacgtcagggactaaagtgataacggaagtgcagaatcag 35178847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 10899052 - 10899120
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||| | || ||||||||| ||||| ||| ||||||||||| | |||| ||||||||    
T  10899052 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagac 10899120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 13578300 - 13578351
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||||||||||||||||  |||| ||| |||||||||||    
T  13578300 acatcatcacttaacataattatttaacgtc-aggactaaagtgataacggaa 13578351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 33607618 - 33607670
Alignment:
Q  25 taattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    ||||||||||||||| ||| | ||||||||||||||| | |||||||||||||    
T  33607618 taattatttaacgtcagggtctaaaatgataacggaagtgcagaatcagagac 33607670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 42477524 - 42477472
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||||| || ||||||||| ||||  |||||||||||||||    
T  42477524 acatcatcacttaacatatttttttaacgtcagggattaaaatgataacggaa 42477472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 34888905 - 34888954
Alignment:
Q  12 tcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||||||||||||||||| ||||||  |||| ||| |||||||||||    
T  34888905 tcatcacttaacataattattaaacgtcaaggactaaagtgataacggaa 34888954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 5930112 - 5930164
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||| |||||||||| | | ||||| ||| |||||||||||    
T  5930112 acatcatcacttaacagaattatttaatggcagggactaaagtgataacggaa 5930164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 7258419 - 7258351
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaaatacagaatcagagac 77  Q
    |||||||||||||||| | || ||||||||| ||||| ||| ||||||| ||| | |||| ||||||||    
T  7258419 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacagaagtgcagagtcagagac 7258351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 7259663 - 7259715
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||| | || ||||||||| ||||| ||| |||||||||||    
T  7259663 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaa 7259715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 33060954 - 33060902
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    ||||||||| |||||| |||||||||||||| | ||| ||| |||||||||||    
T  33060954 acatcatcatttaacagaattatttaacgtcagagactaaagtgataacggaa 33060902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 44529172 - 44529124
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataac 57  Q
    |||||||| ||||||| |||||||||||||| ||||| ||| |||||||    
T  44529172 acatcatcgcttaacaaaattatttaacgtcagggactaaagtgataac 44529124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 45584475 - 45584527
Alignment:
Q  9 acatcatcacttaacataattatttaacgtctgggacgaaaatgataacggaa 61  Q
    |||||||||||||||| | || ||||||||| ||||| ||| |||||||||||    
T  45584475 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaa 45584527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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