View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_8 (Length: 463)
Name: NF4061_low_8
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Original strand, 1716959 - 1717386
Alignment:
| Q |
20 |
ttgcatctagagctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgca |
119 |
Q |
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| T |
1716959 |
ttgcatctagagctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgca |
1717058 |
T |
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| Q |
120 |
tgagaatacacatccatttgtgcttggacatatctttggtagtcttgcataggcgccccttctatactccattcagctgtccattcccctacccaaatag |
219 |
Q |
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| T |
1717059 |
tgagaatacacatccatttgtgcttggacatatctttggtagtcttgcataggtgccccttgtatactccattcagctgtccattcccctacccaaatag |
1717158 |
T |
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| Q |
220 |
aaaagtaaaaacatttagatatcctcaatatataacatgatctctaataaaattatcaataaagttaactattattggcaaggatttggtttttacctac |
319 |
Q |
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| T |
1717159 |
aaaagtaaaaacatttagatatcctcaatatataatatgatctctaataaaattatcaataaagttaactattattggcaaggatttggtatttacctac |
1717258 |
T |
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| Q |
320 |
aaaactaagagcatttgatgaagagacaccactaagatcccatgctctatcatttcttatgtagtcaatattttgttgaacactcatttccttaaattta |
419 |
Q |
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| T |
1717259 |
aaaactaagagcatttgatgaagagacaccactaagatcccaggctctatcatttcttatgtagtcaatattttgttgaacattcatgccattgaatttg |
1717358 |
T |
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| Q |
420 |
tccgaatacatattgtagtaatgcacat |
447 |
Q |
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| T |
1717359 |
tccgaatacaaattgtagtaatgcacat |
1717386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 1738358 - 1738598
Alignment:
| Q |
13 |
gaaccccttgcatctagagctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaa |
112 |
Q |
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| T |
1738358 |
gaaccccttacatctagagctttatgtaaccattttcgatcaaccacttgagactccatttgttattctgacatttataggaccaaaaagcccatccaaa |
1738457 |
T |
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| Q |
113 |
tgttgcatgagaatacacatccatttgtgcttggacatatctttggtagtcttgcataggcgccccttctatactccattcagctgtccattcccctacc |
212 |
Q |
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| T |
1738458 |
tgttgcacgagaatatacatccatttgtgtttggacatatctttggtagtcttgcatagacgcaccttgtatgctccattcagccgtccattcccctacc |
1738557 |
T |
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| Q |
213 |
caaatagaaaagtaaaaacatttagatatcctcaatatata |
253 |
Q |
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| T |
1738558 |
aaaatagaaaagtaaaatcatttagatatcctcaatatata |
1738598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 1753505 - 1753662
Alignment:
| Q |
14 |
aaccccttgcatctagagctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaat |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
1753505 |
aaccccttacatctagagctttatgtaaccattctcgatcatccacttgagactccaatggttatattgacatttgtatgcccaataagcccatccaaat |
1753604 |
T |
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| Q |
114 |
gttgcatgagaatacacatccatttgtgcttggacatatctttggtagtcttgcatag |
171 |
Q |
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| T |
1753605 |
gttgcacgagaatacacatctagttgtgcttggccatatctttggtagtcttgcatag |
1753662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 293 - 447
Target Start/End: Original strand, 1738727 - 1738883
Alignment:
| Q |
293 |
attggcaaggatttggtt--tttacctacaaaactaagagcatttgatgaagagacaccactaagatcccatgctctatcatttcttatgtagtcaatat |
390 |
Q |
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| T |
1738727 |
attggcaaggatttggttattttacctacaaaactaagagcatttgaagaagagaaaccactaagatccccggctctgtcatttcttatgaagtcaatat |
1738826 |
T |
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| Q |
391 |
tttgttgaacactcatttccttaaatttatccgaatacatattgtagtaatgcacat |
447 |
Q |
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| T |
1738827 |
tttgttgaacattcatgccattgaatttgtcccaaaacatattgtagtaatgcacat |
1738883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 300 - 447
Target Start/End: Original strand, 1748591 - 1748738
Alignment:
| Q |
300 |
aggatttggtttttacctacaaaactaagagcatttgatgaagagacaccactaagatcccatgctctatcatttcttatgtagtcaatattttgttgaa |
399 |
Q |
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||||||||||||||||||| |||| |||||||||||| |||||| |||||| |||||| ||||||| |||||||||||| |||| ||||||||||||| |
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| T |
1748591 |
aggatttggtttttacctataaaagtaagagcatttgttgaagatacaccagcaagatctgatgctctttcatttcttatgaagtcgatattttgttgaa |
1748690 |
T |
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| Q |
400 |
cactcatttccttaaatttatccgaatacatattgtagtaatgcacat |
447 |
Q |
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| T |
1748691 |
cattcatgccattgaatttttcccaaaacatattgtagtaatgcacat |
1748738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 1748265 - 1748381
Alignment:
| Q |
30 |
agctttatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgcatgagaataca |
129 |
Q |
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||||||||||||||||||||||||| |||||| || |||||| | ||| | ||||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
1748265 |
agctttatgtaaccattctcgatcatccacttaaggctccaacgattaaactgacatttgtaggaccaataagcccatccaaatgttgcccgagaataca |
1748364 |
T |
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| Q |
130 |
catccatttgtgcttgg |
146 |
Q |
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| T |
1748365 |
catccaattgggcttgg |
1748381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 447
Target Start/End: Original strand, 1753919 - 1754054
Alignment:
| Q |
312 |
ttacctacaaaactaagagcatttgatgaagagacaccactaagatcccatgctctatcatttcttatgtagtcaatattttgttgaacactcatttcct |
411 |
Q |
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|||||||||||||||||||| |||| ||||||||| || |||||||| | ||||| || || |||||||||||||||||||||||||| |||| | |
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| T |
1753919 |
ttacctacaaaactaagagcgtttgttgaagagacgccgctaagatctgaggctctttcgttgtttatgtagtcaatattttgttgaacattcatgttag |
1754018 |
T |
|
| Q |
412 |
taaatttatccgaatacatattgtagtaatgcacat |
447 |
Q |
| |
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| T |
1754019 |
tgaatttgtccgaataaagattgtagtaatgcacat |
1754054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 38086985 - 38087047
Alignment:
| Q |
53 |
caaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgt |
115 |
Q |
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| T |
38086985 |
caaccacttaagactccagttgttagagtcacatttgtaagcccaatatgcccatccaaatgt |
38087047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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