View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4061_low_9 (Length: 460)
Name: NF4061_low_9
Description: NF4061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4061_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 22434578 - 22434145
Alignment:
| Q |
12 |
atcatcagtggatttcagattcaagtggactattatatcagcattgcttctttctgtttctgttttggcacttcccttcctcaataaaaaagaatgtgtt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22434578 |
atcatcagtggatttcagattcaagtggactattatatcagcattgcttctttctgtttctgttttggcacttcccttcctcaataaaaaagaatgtgtt |
22434479 |
T |
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| Q |
112 |
gtttttcattgttattaagatgtataatatatgttgtgagatcttttcctttgaatgattgtaagaaattaatatgttgtgtgaactttgcttatcttgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22434478 |
gtttttcattgttattaagatgtataatatatgttgtgagatcttttcctttgaatgattgtaagaaattaatatgttgtgtgaactttgcttatcttgg |
22434379 |
T |
|
| Q |
212 |
ttgttgtttttacttatcttaggatttgtgactccttttctttgtattttgttatgtattacttatcttgtttttacttatctccatcgttcgtaaaact |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22434378 |
ttgttgtttttacttatcttaggatttgtgactccttttctttgtattttgttatgtattacttatcttgtttttacttatctccatcgttcgtaaaact |
22434279 |
T |
|
| Q |
312 |
cgtttgaagctcttttgtgaacctccttgaagctgctcacaatttgcattcttactcttcaattacttccagctctataaatcaagtttaaaagtagtta |
411 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22434278 |
cgtctgaagctcttttgtgaacctccttgaagctgctcacaatttgcattcttactcttcaattacttccagctctataaatcaagtttaaaagtagtta |
22434179 |
T |
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| Q |
412 |
tataaccctttccaaattcgactgcagaaaatcc |
445 |
Q |
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| T |
22434178 |
tataaccctttccaaattcgactgcagaaaatcc |
22434145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 22465846 - 22465752
Alignment:
| Q |
32 |
tcaagtggactattatatcagcattgcttctttctgtttctgttttggcacttcccttcctcaataaaaaagaatgtgttgtttttcattgttat |
126 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22465846 |
tcaagtggactattatatcagcattgcttctttctgtacctgtttttgcactgcccttcctcaataaaaaacaatgtgttgtttttcattgttat |
22465752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 22633218 - 22633144
Alignment:
| Q |
130 |
gatgtataatatatgttgtgagatcttttcctttgaa-tgattgtaagaaattaatatgttgtgtgaactttgctt |
204 |
Q |
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| T |
22633218 |
gatgtataatatatgttgtgagatattt-cctttgaaatgattgtaagaaattaatatgttgtgtgaactttgctt |
22633144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 22440608 - 22440548
Alignment:
| Q |
66 |
tgtttctgttttggcacttcccttcctcaataaaaaagaatgtgttgtttttcattgttat |
126 |
Q |
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| T |
22440608 |
tgttcctgttttggcacttccattcctcaataaaaaagaatgtgttgtttttcattgttat |
22440548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 22448491 - 22448418
Alignment:
| Q |
130 |
gatgtataatatatgttgtgagatcttttcctttgaatgattgtaagaaattaatatgttgtgtgaactttgctt |
204 |
Q |
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| T |
22448491 |
gatgtataatatatgttgtgagatccttttgtt-gaatgattgtaagaaattaatattttgtgtgaactttgctt |
22448418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 22355614 - 22355556
Alignment:
| Q |
53 |
cattgcttctttctgtttctgttttggcacttcccttcctcaataaaaaagaatgtgtt |
111 |
Q |
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| T |
22355614 |
cattgcttctttctgtttttgatttggcacttcccttcctcaataaaaataaatgtgtt |
22355556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 22440524 - 22440452
Alignment:
| Q |
130 |
gatgtataatatatgttgtgagatcttttcctttgaatgattgtaagaaattaatatgttgtgtgaactttgctt |
204 |
Q |
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||||||||||||||||||| ||||||| | || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22440524 |
gatgtataatatatgttgttagatcttcacatt-gaatgat-gtaagaaattaatatgttgtgtgaactttgctt |
22440452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 22465701 - 22465652
Alignment:
| Q |
130 |
gatgtataatatatgttgtgagatcttttcctttgaatgattgtaagaaat |
180 |
Q |
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| T |
22465701 |
gatgtataatatatgttgtgagatc-tttcctttaaatgattgtaagaaat |
22465652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 22633348 - 22633283
Alignment:
| Q |
31 |
ttcaagtggactattatatcagcattgcttctttctgtttctgttttggcacttcccttcctcaat |
96 |
Q |
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|||||||| ||| || |||||||||||||||||||||| || ||||| |||||||||||||||| |
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| T |
22633348 |
ttcaagtgaacttctagatcagcattgcttctttctgttcttgatttggaacttcccttcctcaat |
22633283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 22351636 - 22351570
Alignment:
| Q |
140 |
atatgttgtgagatcttttcctttgaatgattg---taagaaattaatatgttgtgtgaactttgctt |
204 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| ||||||||||| || || |||||||| |
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| T |
22351636 |
atatgttgtgagatctttt-ctttgaatgattgtaataagacattaatatgttatgagagctttgctt |
22351570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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