View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4062_high_3 (Length: 449)
Name: NF4062_high_3
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 29246030 - 29246470
Alignment:
| Q |
16 |
aattttactaaatcacatgtctaatgtcttcttttactaaataacatgtgtcttaattcttaaggttcaattagtcatat------------atgcttaa |
103 |
Q |
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| T |
29246030 |
aattttactaaatcacatgtctaatgtcttcttttactaaataacatgtgtcttaattcttaaggttcaattagtcatatgttcagacatatatgcttaa |
29246129 |
T |
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| Q |
104 |
ttatatcaaagtttaaaatatttt-aatttccgtacaga-tttaatgtgtatttttcttctagcccatactgtgtctagcaaagcttgttacacaccata |
201 |
Q |
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| T |
29246130 |
ttatatcaaagtttaaaatatttttaatttccgtacagaatttaatgtttatttttattttagcccatactgtgtctagcaaagcttgttacacaccata |
29246229 |
T |
|
| Q |
202 |
atatgactcctggtttgactcttcatagttcatactgtgtcggcacattttgatattacgtagagtcattgtcttatcgagtacaatatttaaccagtca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29246230 |
atatgactcctggtttgactcttcatagttcatactgtgtcggcacattttgatattacgtagagtcattgtcttatcgagtacaatatttaaccagtca |
29246329 |
T |
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| Q |
302 |
gcctttgcttaaatgttgattattcacacttgatcaactcaatttgaaaattctgtggttccccaattatatgatgtgggctcaaatttgactttataac |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29246330 |
gcctttgcttaaatgttgattattcacacttgatcaactcaatttgaaaattctgtggttccccaattatatgatgtgggctcaaatttgactttataac |
29246429 |
T |
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| Q |
402 |
aaacacacatccatactcttattgacctttacattcatctc |
442 |
Q |
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| T |
29246430 |
aaacacacatccatactcttattgacctttacattgatctc |
29246470 |
T |
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