View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4062_low_1 (Length: 543)
Name: NF4062_low_1
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 252 - 539
Target Start/End: Original strand, 52727893 - 52728180
Alignment:
| Q |
252 |
tttatgaggggtaaatcttgacatgtgaccatgcttaattatcatcaagattgaaagttttatctttctgaaagagtatttcaacattggatgtgatgat |
351 |
Q |
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| T |
52727893 |
tttatgaggggtaaatcttgacatgtgaccatgcttaattatcgtcaagattgaaagttttatctttctgaaagagtatttcaacattggatgtgatgat |
52727992 |
T |
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| Q |
352 |
actatgaagttctgaatgaggggtaaatcttgacatgtaaccattacttaaacggtcaagtttgaaagttttaacagtcatataacaatttatactcgcg |
451 |
Q |
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| T |
52727993 |
actatgaagttctgaatgaggggtaaatcttgacatgtaaccattacttaaacggtcaagtttgaaagttttaacagtcatataacaatttatactcgcg |
52728092 |
T |
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| Q |
452 |
actatttcagaagtcacttgatttatgttattattttgatgttcatgggtcaaattcaacgataatattttatttattcttctcactc |
539 |
Q |
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| T |
52728093 |
actatttcagaagtcacttgatttatgttattattttgatgttcatgggtcaaattcaatgataatattttatttattcttctcactc |
52728180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 52727705 - 52727893
Alignment:
| Q |
18 |
cagtgaggacagtcacgggattgcaagagaagctcttggtttggtacgaacctgctaaccctattttgcagatcttgcactattgaatgttcgctagctt |
117 |
Q |
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| T |
52727705 |
cagtgaggacagtcacgggattgcaagagaagctcttggtttggtacgaacctgctaaccctattttgcagatcttccactattgaatgttcgctagctt |
52727804 |
T |
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| Q |
118 |
cttacagtttaattgaaagataattgtagctggaacttgcatgagttgtttagatcattgttaaagattcagccataacgaaccctcct |
206 |
Q |
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| T |
52727805 |
cttacagtttaattgaaagataattgtagctggaacttgcatgagttgtttagatcattgttaaagattcagccataacgaaccctcct |
52727893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 52727970 - 52728036
Alignment:
| Q |
217 |
atttccacattagatgtgatgatactattaaggtttttatgaggggtaaatcttgacatgtgaccat |
283 |
Q |
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| T |
52727970 |
atttcaacattggatgtgatgatactatgaagttctgaatgaggggtaaatcttgacatgtaaccat |
52728036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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