View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4062_low_10 (Length: 248)

Name: NF4062_low_10

Description: NF4062

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4062_low_10

[»] chr4 (5 HSPs)

Alignment Details

Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 5)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 237; E-Value: 1e-131

Query Start/End: Original strand, 8 - 248

Target Start/End: Original strand, 54903732 - 54903972

Alignment:

Q	8	agaagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatct	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54903732	agaagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatct	54903831	T

Q	108	tgacattgcattgtttcctccaaaggaacagcaaccatgtctgtcgaagaaaaatgagaactgggagaagcaaacttaaagttattgtgcaacatttgat	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54903832	tgacattgcattgtttcctccaaaggaacagcaacaatgtctgtcgaagaaaaatgagaactgggagaagcaaacttaaagttattgtgcaacatttgat	54903931	T

Q	208	cattgttaaaatcctcactcaatggaacagaattggaagca	248	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54903932	cattgttaaaatcctcactcaatggaacagaattggaagca	54903972	T

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Target: chr4; HSP #2

Raw Score: 61; E-Value: 3e-26

Query Start/End: Original strand, 10 - 141

Target Start/End: Original strand, 54893218 - 54893352

Alignment:

Q	10	aagaagcaagataatccaaggtattgttgaaggaagaactcgcattttgatgttg---tgtgtaccatggagcatttataacattcccaagtaagccatc	106	Q
		\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54893218	aagaagcaagagagtccaaggtattgttgaaggaagagctgacattttgctgctgcgtcgtgtaacatgaagcctttacaacattcccaagtaagccatc	54893317	T

Q	107	ttgacattgcattgtttcctccaaaggaacagcaa	141	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	54893318	ttgacattgcatcgcttcctccgaaggaacagcaa	54893352	T

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Target: chr4; HSP #3

Raw Score: 60; E-Value: 1e-25

Query Start/End: Original strand, 22 - 137

Target Start/End: Original strand, 54887603 - 54887718

Alignment:

Q	22	aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\|\| \|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	54887603	aatccaaggtattgttgaaggaagaacccacattttgctgatgcgtgtaacatgaagccgttacaacactcccaagtaatccatcttgacattgcatcgt	54887702	T

Q	122	ttcctccaaaggaaca	137	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	54887703	ttcctctaaaggaaca	54887718	T

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Target: chr4; HSP #4

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 162 - 248

Target Start/End: Original strand, 54887764 - 54887850

Alignment:

Q	162	tgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagca	248	Q
		\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|
T	54887764	tgagaactgagtgaggcaaactttaagctattgtgagatatttgatcattattaaaatcctcactcaatggagaaggattggaagca	54887850	T

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Target: chr4; HSP #5

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 162 - 248

Target Start/End: Original strand, 54893388 - 54893474

Alignment:

Q	162	tgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagca	248	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|
T	54893388	tgagaactgggagaggcaaaatttaagctattgccagaaatttgatcattgttaaaatcctcactcaatggagaaggattggaagca	54893474	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]