View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4062_low_14 (Length: 224)
Name: NF4062_low_14
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_low_14 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 49871979 - 49871762
Alignment:
| Q |
7 |
gcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatcttaacaaaattgatgagattgcttatgatct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49871979 |
gcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatcttaacaaaattgatgagattgcttatgatct |
49871880 |
T |
|
| Q |
107 |
taaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaaatacccatgcaggacaaaccatggctaaggctctt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
49871879 |
taaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaactacccatgcaggacaaaccatggctaaggttctt |
49871780 |
T |
|
| Q |
207 |
aactcttctttggagcta |
224 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
49871779 |
aacgcttctttggagcta |
49871762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 49866048 - 49865831
Alignment:
| Q |
7 |
gcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatcttaacaaaattgatgagattgcttatgatct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
49866048 |
gcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatattagaaaaattgatgagattgcttatgatct |
49865949 |
T |
|
| Q |
107 |
taaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaaatacccatgcaggacaaaccatggctaaggctctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
49865948 |
taaagtttggctctcaggtacacttgccaatcaacaaacatgtttatatggatttgagaacacaactacccatgcagaacaaaccatggctaaggttctt |
49865849 |
T |
|
| Q |
207 |
aactcttctttggagcta |
224 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
49865848 |
aaggcttctttggagcta |
49865831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University