View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4062_low_3 (Length: 491)
Name: NF4062_low_3
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 478
Target Start/End: Original strand, 23030727 - 23031188
Alignment:
| Q |
17 |
caaaatttgcactacatataaagtgatacgtaataattatggtgattgtgnnnnnnngtttataggttgtgtgcaaatgggagcaggtggtagagcctct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030727 |
caaaatttgcactacatataaagtgatacgtaataattattgtgattgtgtttttttctttataggttgtgtgcaaatgggagcaggtggtagagcctct |
23030826 |
T |
|
| Q |
117 |
aatcctccatcacaaaggaaaatagagagtgatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattc |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030827 |
aatcctccatcacaaaggaaaatagagaatgatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattc |
23030926 |
T |
|
| Q |
217 |
caccacattgttttaaccgttcattgattagatcattttcctatgtcattgttgaccttaccatagcatcaatccttgtctacatagccacaaattattt |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
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| T |
23030927 |
caccacattgttttcaccgttcattgattagatcattttcctatgtcattgttgaccttaccatagcatcaatccttgcctatatagccacaaattactt |
23031026 |
T |
|
| Q |
317 |
tcctacccttccacataacctctcatttttggcgtgggccgtttattgggtcatccaaggatgcattctaaccggagtttgggtcattgcacacgaatgt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23031027 |
tcctacccttccacataacctctcatttttggcgtggcccgtttattgggccatccaaggatgcattctaaccggagtttgggtcattgcacatgaatgt |
23031126 |
T |
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| Q |
417 |
ggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttgttcttcattc |
478 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23031127 |
ggccatcatgcatttagtaattatcaatgggtcgacgatttagttggccttgtccttcattc |
23031188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 446
Target Start/End: Original strand, 50593858 - 50593934
Alignment:
| Q |
370 |
tccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
446 |
Q |
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||||||| |||||||| ||||| |||||||| || || || |||||||| ||||||||||||||||| || |||||| |
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| T |
50593858 |
tccaaggttgcattctcaccggtgtttgggtgatagctcatgaatgtggtcaccatgcatttagtaactaccaatgg |
50593934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 472
Target Start/End: Original strand, 37019912 - 37020015
Alignment:
| Q |
369 |
atccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttg |
468 |
Q |
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|||||||| ||||| || ||||| ||||||||||||||||| || ||||||||||||||||| ||| | ||||||||| | || ||| |||||||||| |
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| T |
37019912 |
atccaaggttgcatccttaccggtgtttgggtcattgcacatgagtgtggccaccatgcattcagtgactatcaatggcttgatgatacagttggcctta |
37020011 |
T |
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| Q |
469 |
ttct |
472 |
Q |
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|||| |
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|
| T |
37020012 |
ttct |
37020015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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